Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p25990 Brassica napus HOM05D050312 ORTHO05D041029 3.5e-68 261.5 137 100.0
BolC6t37763H Brassica oleracea HOM05D050312 ORTHO05D041029 1.6e-44 183.0 137 76.6
BcaC07g40238 Brassica carinata HOM05D000328 ORTHO05D000191 1.5e-13 80.1 51 78.4
BcaC07g40312 Brassica carinata HOM05D000328 ORTHO05D000191 1.5e-13 80.1 51 78.4
BcaC07g40322 Brassica carinata HOM05D000328 ORTHO05D000191 1.5e-13 80.1 51 78.4
A09p51490 Brassica napus HOM05D000328 ORTHO05D000191 1.5e-13 80.1 51 78.4
A09p51620 Brassica napus HOM05D000703 ORTHO05D000191 1.5e-13 80.1 51 78.4
C08p34250 Brassica napus HOM05D000328 ORTHO05D000191 1.5e-13 80.1 51 78.4
C08p34390 Brassica napus HOM05D000703 ORTHO05D000191 1.5e-13 80.1 51 78.4
BolC8t51022H Brassica oleracea HOM05D000328 ORTHO05D000191 1.5e-13 80.1 51 78.4
BolC8t51038H Brassica oleracea HOM05D000328 ORTHO05D000191 1.5e-13 80.1 51 78.4
BraA09t40586Z Brassica rapa HOM05D000328 ORTHO05D000191 1.5e-13 80.1 51 78.4
BraA09t40601Z Brassica rapa HOM05D000328 ORTHO05D000191 1.5e-13 80.1 51 78.4
AL5G40960 Arabidopsis lyrata HOM05D000328 ORTHO05D000191 1.9e-13 79.7 49 81.6
BcaC07g40240 Brassica carinata HOM05D000328 ORTHO05D000191 4.2e-13 78.6 51 76.5
BcaC07g40311 Brassica carinata HOM05D000328 ORTHO05D000191 4.2e-13 78.6 51 76.5
BcaC07g40462 Brassica carinata HOM05D000328 ORTHO05D000191 4.2e-13 78.6 51 76.5
AT3G59070 Arabidopsis thaliana HOM05D000328 ORTHO05D000191 2.7e-12 75.9 49 75.5
Carub.0005s2583 Capsella rubella HOM05D000328 ORTHO05D000191 1.0e-11 73.9 94 48.9
CARHR169490 Cardamine hirsuta HOM05D000328 ORTHO05D000191 4.0e-11 72.0 51 72.5
AL8G21850 Arabidopsis lyrata HOM05D000328 ORTHO05D000191 6.8e-11 71.2 51 66.7
AT5G48750 Arabidopsis thaliana HOM05D000328 ORTHO05D000191 2.6e-10 69.3 48 68.8
Thhalv10005638m.g Eutrema salsugineum HOM05D000328 ORTHO05D000191 3.4e-10 68.9 51 64.7
Carub.0008s0873 Capsella rubella HOM05D000328 ORTHO05D000191 4.4e-10 68.6 49 67.3
Thhalv10005375m.g Eutrema salsugineum HOM05D000328 ORTHO05D000191 9.8e-10 67.4 51 62.7
AL8G22280 Arabidopsis lyrata HOM05D000328 ORTHO05D000191 1.1e-08 63.9 62 54.8
AL8G22260 Arabidopsis lyrata HOM05D000328 ORTHO05D000191 1.8e-08 63.2 49 61.2
AL34U10030 Arabidopsis lyrata HOM05D000328 ORTHO05D000191 3.1e-08 62.4 62 53.2
THA.LOC104818955 Tarenaya hassleriana HOM05D000328 ORTHO05D000191 1.6e-07 60.1 51 54.9
THA.LOC104818947 Tarenaya hassleriana HOM05D000328 ORTHO05D000191 2.7e-07 59.3 51 54.9
THA.LOC104820115 Tarenaya hassleriana HOM05D000328 ORTHO05D000191 2.7e-07 59.3 51 54.9
Aa31LG2G11050 Aethionema arabicum HOM05D000328 ORTHO05D000191 4.5e-07 58.5 51 56.9
THA.LOC104820114 Tarenaya hassleriana HOM05D000328 ORTHO05D000191 5.9e-07 58.2 51 52.9
AUR62012813 Chenopodium quinoa HOM05D000328 ORTHO05D000191 2.3e-06 56.2 45 57.8
DCAR_019228 Daucus carota HOM05D000328 ORTHO05D000191 2.3e-06 56.2 53 50.9
AUR62015076 Chenopodium quinoa HOM05D000328 ORTHO05D000191 2.9e-06 55.8 66 48.5
AUR62021840 Chenopodium quinoa HOM05D000328 ORTHO05D000191 2.9e-06 55.8 48 54.2
Haze_12704 Corylus avellana HOM05D000328 ORTHO05D000191 2.9e-06 55.8 65 49.2
Cfa014255 Carpinus fangiana HOM05D000328 ORTHO05D000191 3.8e-06 55.5 65 49.2
Cfa014256 Carpinus fangiana HOM05D000328 ORTHO05D000191 3.8e-06 55.5 65 49.2
AUR62017533 Chenopodium quinoa HOM05D000328 ORTHO05D000191 3.8e-06 55.5 66 47.0
Atru.chr1.2378 Acer truncatum HOM05D000328 ORTHO05D000191 5.0e-06 55.1 50 56.0
Cfa014254 Carpinus fangiana HOM05D000328 ORTHO05D000191 6.6e-06 54.7 65 47.7
PGR042G2964 Punica granatum HOM05D000328 ORTHO05D000191 6.6e-06 54.7 50 56.0
EL10Ac8g20218 Beta vulgaris HOM05D000328 ORTHO05D000191 8.6e-06 54.3 45 53.3
Haze_12711 Corylus avellana HOM05D000328 ORTHO05D000191 8.6e-06 54.3 65 46.2
Eucgr.E03916 Eucalyptus grandis HOM05D000328 ORTHO05D000191 8.6e-06 54.3 74 47.3
Gohir.A06G154300 Gossypium hirsutum HOM05D000328 ORTHO05D000191 8.6e-06 54.3 50 60.0
Medtr7g098270 Medicago truncatula HOM05D000328 ORTHO05D000191 8.6e-06 54.3 49 57.1
Nn1g03271 Nelumbo nucifera HOM05D000328 ORTHO05D000191 8.6e-06 54.3 74 45.9


User provided reference genes

Program Settings