Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 2.3e-155 552.4 318 100.0
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 5.4e-152 541.2 320 98.1
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 5.0e-142 508.1 305 97.4
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 4.3e-141 505.0 313 94.2
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 1.4e-136 490.0 319 90.9
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.2e-130 470.3 310 90.3
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 2.2e-129 466.1 306 89.9
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 9.2e-128 460.7 310 89.0
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.7e-126 456.4 307 89.6
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 2.5e-125 452.6 310 87.4
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 2.5e-125 452.6 310 87.4
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.6e-124 449.9 310 87.7
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 4.7e-124 448.4 290 91.0
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 6.2e-124 448.0 301 90.0
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.8e-123 446.4 309 85.1
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.4e-120 436.8 294 87.1
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 2.7e-119 432.6 304 84.9
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 6.6e-118 427.9 294 86.4
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 1.7e-110 403.3 310 79.4
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 1.5e-106 390.2 292 77.1
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 2.0e-106 389.8 297 79.5
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 6.4e-105 384.8 293 77.8
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 8.4e-105 384.4 294 70.4
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 3.2e-104 382.5 294 70.1
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 4.2e-104 382.1 301 68.4
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 9.3e-104 380.9 291 75.6
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 2.1e-103 379.8 298 73.2
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.1e-103 379.8 303 68.0
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 2.7e-103 379.4 294 69.7
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 7.8e-103 377.9 294 69.7
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 7.8e-103 377.9 294 69.7
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.0e-102 377.5 291 69.8
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 3.0e-102 375.9 295 70.2
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 6.6e-102 374.8 295 68.1
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.1e-101 374.0 289 73.0
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.5e-101 373.6 293 76.1
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 4.3e-101 372.1 300 67.0
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 5.6e-101 371.7 309 72.2
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 9.6e-101 370.9 294 68.0
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 1.3e-100 370.5 311 70.1
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.3e-100 370.5 287 68.6
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.6e-100 370.2 291 76.3
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 2.1e-100 369.8 298 74.5
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 4.8e-100 368.6 291 68.0
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 4.8e-100 368.6 302 66.2
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 6.2e-100 368.2 301 72.4
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 8.1e-100 367.9 298 67.1
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.1e-99 367.5 313 64.2
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.1e-99 367.5 302 65.9
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.4e-99 367.1 292 67.8
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.4e-99 366.3 292 67.8
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.4e-99 366.3 303 73.6
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 3.1e-99 365.9 303 71.9
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.0e-99 365.5 301 73.8
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.0e-99 365.5 297 67.0
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 5.3e-99 365.2 300 66.3
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 5.3e-99 365.2 304 65.8
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 9.0e-99 364.4 298 66.8
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.2e-98 364.0 294 66.3
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.2e-98 364.0 287 68.6
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.2e-98 364.0 298 66.8
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.5e-98 363.6 296 65.5
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 1.5e-98 363.6 294 72.8
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 2.0e-98 363.2 301 74.1
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 2.6e-98 362.8 294 66.7
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.4e-98 362.5 291 67.7
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 4.5e-98 362.1 300 73.7
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.8e-98 361.7 298 66.4
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 5.8e-98 361.7 300 64.7
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 5.8e-98 361.7 286 73.8
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 7.6e-98 361.3 298 66.4
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 9.9e-98 360.9 295 73.6
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 9.9e-98 360.9 305 66.2
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 9.9e-98 360.9 302 70.9
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 9.9e-98 360.9 298 66.4
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 9.9e-98 360.9 308 64.9
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.3e-97 360.5 308 72.4
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.3e-97 360.5 308 72.4
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.2e-97 359.8 292 66.4
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 2.9e-97 359.4 296 67.6
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 2.9e-97 359.4 291 68.0
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 6.4e-97 358.2 300 64.3
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.1e-96 357.5 286 67.5
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.4e-96 357.1 293 68.3
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.4e-96 357.1 286 72.4
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.9e-96 356.7 291 75.9
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.9e-96 356.7 294 67.7
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 4.2e-96 355.5 294 68.0
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 7.1e-96 354.8 291 67.4
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 1.6e-95 353.6 302 65.2
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.7e-95 352.8 302 70.9
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 7.9e-95 351.3 287 76.0
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.3e-94 350.5 314 65.6
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 3.0e-94 349.4 293 68.9
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 3.9e-94 349.0 291 66.3
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 3.9e-94 349.0 294 65.0
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 3.9e-94 349.0 297 66.7
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 5.1e-94 348.6 292 71.2
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 8.7e-94 347.8 291 70.4
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 9.6e-93 344.4 295 63.1
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 8.1e-92 341.3 314 65.0
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 8.1e-92 341.3 305 61.3
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.1e-91 340.9 295 64.1
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.1e-91 340.9 307 64.5
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 4.0e-91 339.0 314 65.3
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 6.9e-91 338.2 314 64.0
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 3.4e-90 335.9 295 66.1
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.3e-89 334.0 294 63.6
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 4.2e-88 328.9 288 70.5
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 6.0e-87 325.1 293 62.1
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.9e-86 322.4 306 59.5
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.3e-85 319.3 309 59.9
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 7.1e-80 301.6 285 60.4
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.4e-75 286.6 204 86.3
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 7.7e-74 281.6 215 69.3
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 2.5e-72 276.6 233 63.5
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 2.5e-72 276.6 294 54.8
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.6e-71 273.9 293 57.7
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.4e-70 270.8 295 54.9
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.1e-69 267.7 242 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 5.5e-64 248.8 292 59.9
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.6e-63 246.1 292 58.2
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 7.4e-61 238.4 307 54.4
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 2.9e-57 226.5 214 61.7
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 2.5e-56 223.4 238 60.5
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 1.8e-54 217.2 295 54.6
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 5.7e-53 212.2 280 51.4
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.7e-44 184.1 257 47.1
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 3.7e-44 183.0 314 42.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 6.5e-41 172.2 298 45.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.6e-39 167.5 189 53.4
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 3.7e-36 156.4 288 36.5
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 6.3e-36 155.6 169 58.6
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 6.3e-36 155.6 169 58.6
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 6.3e-36 155.6 169 58.6
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 5.4e-35 152.5 320 36.2
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 3.6e-31 139.8 127 63.0
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 6.8e-30 135.6 80 83.8
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 8.9e-30 135.2 119 58.8
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 4.4e-29 132.9 119 60.5
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.4e-27 127.9 168 41.7
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.7e-25 120.9 93 67.7
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 4.3e-24 116.3 61 95.1
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 2.8e-23 113.6 66 86.4
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 1.4e-22 111.3 127 51.2
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 5.2e-22 109.4 221 34.4
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 4.9e-20 102.8 67 76.1
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 1.9e-19 100.9 160 40.6
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.3e-16 89.7 171 40.4
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 8.0e-15 85.5 71 59.2
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 8.0e-15 85.5 89 55.1
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 3.1e-14 83.6 69 68.1
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.2e-13 81.6 71 56.3
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 6.0e-10 69.3 78 47.4
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 3.9e-09 66.6 97 40.2
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.6e-07 61.2 40 70.0
AT3G43260 Arabidopsis thaliana HOM05D046300 ORTHO05D038666 4.7e-07 59.7 60 46.7
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.0e-06 56.6 95 36.8


User provided reference genes

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