Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.8e-173 612.5 297 100.0
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.9e-135 486.1 304 81.9
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 2.1e-134 482.6 297 83.2
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 2.7e-129 465.7 297 80.1
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 2.9e-123 445.7 323 71.5
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 5.1e-120 434.9 295 75.9
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.4e-117 426.8 300 72.0
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 7.5e-116 421.0 301 70.4
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 3.7e-115 418.7 300 70.3
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 4.9e-115 418.3 299 70.6
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 4.1e-114 415.2 301 68.4
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 5.4e-114 414.8 305 69.5
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 3.0e-112 409.1 301 69.8
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 7.3e-111 404.4 294 69.4
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 4.7e-102 375.2 297 64.3
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 3.8e-99 365.5 299 62.9
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 5.3e-93 345.1 321 58.9
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 4.2e-90 335.5 297 57.9
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 3.9e-88 328.9 299 55.9
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 3.9e-88 328.9 301 56.5
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.5e-87 327.0 297 54.5
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.5e-87 327.0 300 54.7
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.5e-87 327.0 299 54.5
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 2.5e-87 326.2 299 55.2
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 7.4e-87 324.7 300 56.0
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 1.3e-86 323.9 299 54.2
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.6e-86 323.6 299 53.5
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 2.1e-86 323.2 301 55.1
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 3.7e-86 322.4 260 62.7
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 8.1e-86 321.2 299 55.9
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 2.4e-85 319.7 304 52.3
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 5.3e-85 318.5 299 54.5
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 5.3e-85 318.5 300 55.0
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.5e-84 317.0 299 52.8
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.9e-83 312.0 300 53.0
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 6.4e-83 311.6 300 53.3
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 6.4e-83 311.6 305 52.8
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 2.5e-82 309.7 300 52.3
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 9.3e-82 307.8 300 52.7
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 9.3e-82 307.8 300 53.0
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 1.2e-81 307.4 302 52.3
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.6e-81 307.0 300 52.3
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 2.1e-81 306.6 299 52.8
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.6e-81 305.4 300 52.3
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 6.0e-81 305.1 300 51.7
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 7.9e-81 304.7 299 52.5
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.0e-80 304.3 301 49.5
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.0e-80 304.3 300 52.0
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.3e-80 303.9 302 51.7
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 3.9e-80 302.4 300 51.7
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 1.5e-79 300.4 302 51.0
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-79 300.4 302 51.0
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 1.5e-79 300.4 311 52.4
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 4.3e-79 298.9 302 50.0
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 5.6e-79 298.5 300 51.7
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 2.1e-78 296.6 302 51.0
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.8e-78 296.2 293 51.9
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 2.8e-78 296.2 300 50.3
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.8e-78 295.4 295 51.5
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 4.8e-78 295.4 300 49.7
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 6.2e-78 295.0 302 51.3
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 6.9e-77 291.6 302 51.0
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.0e-77 291.2 300 52.3
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.2e-76 290.8 298 50.3
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.5e-76 290.4 283 52.7
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 2.0e-76 290.0 259 54.8
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 3.4e-76 289.3 300 49.3
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 7.6e-76 288.1 299 50.2
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.0e-75 287.7 280 52.9
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.3e-75 287.3 258 52.3
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 2.2e-75 286.6 299 49.5
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 3.8e-75 285.8 260 60.8
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 6.5e-75 285.0 305 49.8
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.9e-74 283.5 299 48.2
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 2.5e-74 283.1 299 48.5
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.2e-74 282.3 249 55.4
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.2e-74 282.3 249 55.4
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.2e-73 280.8 299 49.5
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 1.6e-73 280.4 299 48.5
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 1.6e-73 280.4 299 47.8
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.0e-72 277.7 299 45.5
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 3.0e-72 276.2 279 49.8
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 5.1e-72 275.4 301 48.5
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.1e-71 274.2 258 52.3
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.9e-71 273.5 258 50.8
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.2e-70 270.0 277 50.2
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.8e-70 269.6 321 45.5
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 3.7e-70 269.2 367 42.5
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 8.2e-70 268.1 302 46.0
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 1.1e-69 267.7 302 47.0
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.4e-68 262.7 279 47.7
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.9e-67 259.6 142 83.8
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.9e-66 256.9 279 46.6
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 4.2e-66 255.8 320 43.1
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 9.4e-66 254.6 275 49.8
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 6.1e-65 251.9 301 43.2
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.0e-64 251.1 242 51.2
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 6.7e-64 248.4 254 49.6
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 8.8e-64 248.1 219 58.0
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.5e-63 247.3 298 44.3
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 2.0e-63 246.9 281 45.9
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 3.7e-62 242.7 260 52.3
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 1.4e-61 240.7 262 48.1
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.3e-59 234.2 178 61.8
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.7e-59 233.8 242 50.0
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 2.1e-57 226.9 224 50.4
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 8.8e-56 221.5 245 44.9
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.4e-55 219.2 183 57.9
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 7.0e-53 211.8 228 48.2
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 8.5e-51 204.9 277 40.4
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 5.5e-50 202.2 302 38.4
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.2e-49 201.1 305 40.7
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 7.4e-47 191.8 237 43.5
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 7.0e-45 185.3 141 59.6
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 7.0e-45 185.3 255 38.4
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.2e-44 184.5 168 57.1
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.0e-43 181.4 218 45.0
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.3e-43 181.0 209 47.4
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.1e-42 177.9 227 39.2
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 5.5e-42 175.6 233 38.2
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.7e-41 173.3 168 48.2
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 6.8e-40 168.7 193 46.1
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 4.4e-39 166.0 254 37.8
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 7.5e-39 165.2 209 43.5
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 9.7e-39 164.9 130 60.8
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.4e-37 160.2 191 44.5
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 9.4e-34 148.3 368 28.5
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 9.4e-34 148.3 172 46.5
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.2e-32 142.5 99 65.7
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.7e-31 139.0 101 63.4
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 5.7e-31 139.0 110 59.1
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.5e-31 138.7 101 63.4
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.2e-30 137.1 101 61.4
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.8e-30 136.7 234 33.3
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 1.8e-29 134.0 257 32.7
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.2e-26 122.9 180 37.8
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 1.0e-24 118.2 149 45.6
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 2.2e-22 110.5 265 26.8
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.3e-22 109.0 97 53.6
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 1.6e-20 104.4 64 68.8
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 4.5e-20 102.8 96 54.2
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.7e-19 100.9 334 24.3
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.9e-19 99.8 66 62.1
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.0e-19 99.4 66 57.6
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-18 98.2 66 60.6
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-18 98.2 181 36.5
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 3.1e-16 90.1 76 60.5
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.0e-16 89.7 68 63.2
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 2.6e-15 87.0 84 52.4
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.4e-15 86.7 86 54.7
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 9.8e-15 85.1 88 50.0
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.3e-14 84.7 87 49.4
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 6.4e-14 82.4 71 54.9
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 5.4e-13 79.3 91 45.1
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 5.0e-11 72.8 59 52.5
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.5e-07 61.2 77 42.9
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 2.0e-07 60.8 39 66.7
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 7.5e-07 58.9 40 60.0
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 9.8e-07 58.5 63 42.9
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 4.9e-06 56.2 66 48.5


User provided reference genes

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