Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 0.0e+00 1355.9 778 100.0
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 0.0e+00 1354.0 778 99.9
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 0.0e+00 1336.6 779 98.7
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 0.0e+00 1268.4 785 94.3
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 0.0e+00 1158.3 784 86.6
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 3.7e-311 1071.2 817 80.8
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 3.4e-301 1038.1 812 74.1
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.5e-283 978.8 793 71.4
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.1e-259 900.2 815 65.3
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.2e-259 898.3 819 66.3
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 3.5e-253 878.6 817 65.1
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.1e-250 869.4 799 62.8
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 3.6e-234 815.5 661 76.7
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 5.8e-184 648.7 810 53.0
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.3e-159 567.8 732 53.7
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.4e-155 552.0 783 49.3
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 6.5e-135 485.7 673 45.5
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.3e-119 434.9 815 39.9
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 4.9e-114 416.4 780 41.4
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 4.9e-114 416.4 794 40.9
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 6.4e-114 416.0 806 41.7
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 6.4e-114 416.0 794 40.9
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.5e-110 404.8 702 40.3
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 5.2e-108 396.4 777 40.2
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 6.8e-108 396.0 703 41.5
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 6.4e-106 389.4 691 40.8
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 2.7e-104 384.0 693 42.1
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 6.0e-104 382.9 224 98.7
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.3e-102 377.1 692 39.9
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 7.3e-102 375.9 800 37.8
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 2.1e-101 374.4 616 42.9
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.6e-101 373.6 796 38.1
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.8e-100 371.3 750 40.1
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 9.9e-99 365.5 783 39.2
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 1.7e-98 364.8 787 38.4
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.7e-98 364.8 714 39.2
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 2.9e-98 364.0 709 39.8
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 3.7e-98 363.6 726 40.5
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 6.4e-98 362.8 816 37.9
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 8.3e-98 362.5 794 38.2
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.4e-97 361.7 761 39.0
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.9e-97 361.3 699 38.6
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 3.2e-97 360.5 764 39.9
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 4.1e-97 360.1 786 36.3
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 5.4e-97 359.8 697 42.8
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 7.1e-97 359.4 683 39.7
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.2e-96 358.6 673 37.4
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.1e-96 357.8 806 36.5
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 2.1e-96 357.8 701 41.7
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.0e-95 355.5 781 38.0
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 3.9e-95 353.6 809 38.1
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 5.1e-95 353.2 722 39.1
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 8.6e-95 352.4 812 37.2
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.3e-94 350.5 662 36.7
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 9.5e-94 349.0 787 37.1
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 3.4e-91 340.5 801 36.0
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 4.4e-91 340.1 798 36.8
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 4.9e-90 336.7 670 37.6
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.9e-89 334.7 659 36.0
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 4.2e-89 333.6 668 36.7
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 7.1e-89 332.8 754 36.9
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 2.1e-88 331.3 711 36.3
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 7.8e-88 329.3 678 35.8
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.3e-87 327.8 781 35.9
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 3.9e-87 327.0 708 36.6
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 5.1e-87 326.6 736 40.2
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.1e-86 325.5 779 37.4
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.9e-86 324.7 690 38.0
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 5.6e-86 323.2 740 39.5
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.7e-85 320.1 735 37.8
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.4e-84 318.5 780 37.6
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 5.3e-84 316.6 682 37.4
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 5.3e-84 316.6 727 38.9
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.5e-83 315.1 682 36.1
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 4.4e-83 313.5 867 35.8
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 4.9e-82 310.1 691 36.8
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.1e-81 308.9 747 38.6
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.6e-80 305.1 664 36.3
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.3e-79 302.0 685 34.7
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 5.1e-79 300.1 694 34.4
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 4.3e-78 297.0 690 34.8
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 9.6e-78 295.8 674 34.3
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 2.8e-77 294.3 747 36.4
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 6.9e-76 289.7 826 34.7
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.2e-75 288.9 687 36.2
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 1.2e-75 288.9 794 31.9
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.5e-75 288.5 681 33.3
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 3.4e-75 287.3 703 34.7
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 2.2e-74 284.6 674 35.9
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 4.9e-74 283.5 857 31.0
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.4e-73 281.2 714 31.7
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 3.5e-72 277.3 801 36.5
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 3.9e-71 273.9 688 33.3
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.9e-70 271.6 681 33.3
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.3e-69 268.9 703 30.9
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.6e-69 268.5 879 30.9
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 2.4e-68 264.6 718 34.8
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 4.0e-68 263.8 684 32.7
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 2.0e-67 261.5 734 31.3
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.9e-67 259.2 654 30.7
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 5.5e-65 253.4 682 29.8
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.0e-63 249.2 816 33.7
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 3.3e-62 244.2 799 30.2
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 2.4e-60 238.0 633 35.5
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 4.5e-59 233.8 810 29.3
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 3.8e-58 230.7 939 27.6
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 6.0e-56 223.4 737 28.8
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.3e-55 222.2 194 54.1
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.1e-55 220.3 719 29.2
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.5e-54 218.8 632 33.4
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 7.4e-54 216.5 969 30.4
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.7e-53 214.2 302 45.0
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 6.3e-53 213.4 634 34.4
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.5e-51 208.8 661 31.2
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.6e-51 208.0 603 30.2
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.5e-46 192.2 672 28.7
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.7e-45 187.6 661 25.7
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 4.1e-44 184.1 276 42.4
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 9.4e-41 172.9 429 35.4
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 6.1e-40 170.2 698 24.6
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 6.3e-37 160.2 274 38.3
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.2e-35 156.0 133 54.9
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.6e-35 154.8 217 40.6
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.2e-29 135.2 164 53.0
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.4e-28 131.7 150 43.3
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.2e-27 129.4 133 54.1
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 8.5e-26 123.2 233 38.2
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 4.0e-23 114.4 780 27.7
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 2.2e-21 108.6 384 31.8
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 2.8e-21 108.2 144 47.2
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 3.2e-17 94.7 226 34.5
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.5e-17 94.0 203 33.0
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 7.2e-17 93.6 198 36.9
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 6.1e-16 90.5 216 30.1
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 1.5e-14 85.9 515 27.0
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.3e-13 82.8 222 33.3
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 5.0e-10 70.9 75 50.7
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 8.6e-10 70.1 125 36.8


User provided reference genes

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