Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 3.1e-221 771.5 401 100.0
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 3.1e-221 771.5 401 100.0
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 3.1e-221 771.5 401 100.0
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 7.4e-175 617.5 405 84.0
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.5e-162 576.6 415 77.1
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 5.5e-162 574.7 324 93.5
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 8.5e-155 550.8 415 75.2
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.6e-153 546.6 323 89.8
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.0e-152 542.3 420 74.3
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.6e-148 530.0 417 73.1
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 5.4e-141 505.0 399 71.9
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 5.4e-141 505.0 399 71.9
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 5.4e-141 505.0 399 71.9
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.5e-138 496.9 406 70.7
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.5e-138 496.9 406 70.7
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 2.1e-137 493.0 417 67.9
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 2.1e-137 493.0 413 70.2
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 3.6e-137 492.3 409 70.9
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.4e-136 490.3 409 70.2
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 3.6e-129 465.7 379 68.9
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 6.4e-126 454.9 409 61.9
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.5e-119 433.7 411 60.3
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 2.0e-119 433.3 403 64.5
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.4e-119 432.2 388 64.4
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 6.2e-113 411.8 404 62.4
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.4e-104 384.0 291 73.2
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 5.1e-99 365.5 444 49.5
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 4.3e-98 362.5 421 51.8
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 7.3e-98 361.7 447 48.8
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 7.3e-98 361.7 411 52.1
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 6.2e-97 358.6 438 47.3
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.4e-96 356.7 430 48.8
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 3.1e-96 356.3 443 49.2
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 6.9e-96 355.1 429 48.7
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.0e-95 353.6 444 48.4
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.5e-95 352.4 443 48.1
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 5.8e-95 352.1 438 46.3
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 9.9e-95 351.3 444 48.4
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.7e-94 350.5 432 49.3
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.6e-92 344.0 468 47.4
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.0e-92 342.0 465 48.4
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.0e-91 339.7 467 46.3
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.9e-90 337.0 426 48.8
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 2.5e-90 336.7 441 47.2
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 7.4e-90 335.1 466 47.9
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 9.6e-90 334.7 473 46.3
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.6e-90 334.7 476 46.8
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 8.1e-89 331.6 449 46.5
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 6.9e-88 328.6 398 47.7
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.2e-87 327.8 472 47.0
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.2e-87 327.8 465 46.2
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 2.6e-87 326.6 492 44.7
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 2.6e-87 326.6 466 45.9
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.4e-87 326.2 403 45.9
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 4.5e-87 325.9 406 48.5
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.5e-87 325.9 473 46.7
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 4.5e-87 325.9 412 48.1
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 7.6e-87 325.1 463 45.8
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 9.9e-87 324.7 475 45.9
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 1.3e-86 324.3 452 47.1
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.9e-86 323.2 400 46.5
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 3.8e-86 322.8 451 43.2
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 4.9e-86 322.4 411 48.2
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 4.9e-86 322.4 454 45.8
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 9.3e-85 318.2 451 44.3
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.2e-84 317.8 410 47.3
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.2e-84 317.8 482 44.4
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.6e-84 317.4 397 50.1
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 4.6e-84 315.8 474 44.9
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.3e-83 314.3 453 45.3
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.8e-83 313.9 402 49.3
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 3.9e-83 312.8 406 45.3
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 3.9e-83 312.8 440 47.3
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 8.7e-83 311.6 443 46.5
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.1e-82 311.2 466 42.1
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 3.3e-82 309.7 464 43.8
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 3.3e-82 309.7 406 47.3
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 5.6e-82 308.9 437 46.5
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 7.4e-82 308.5 432 44.9
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.3e-81 307.8 460 44.6
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 1.6e-81 307.4 427 47.3
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 2.8e-81 306.6 403 47.1
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 2.4e-80 303.5 420 45.7
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 5.3e-80 302.4 385 47.3
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 3.4e-79 299.7 409 44.5
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 6.5e-78 295.4 443 44.2
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.4e-77 294.3 402 44.5
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.9e-77 293.9 397 44.8
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 2.5e-77 293.5 387 48.6
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 3.2e-77 293.1 399 46.9
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 5.5e-77 292.4 449 44.3
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 3.5e-76 289.7 389 47.8
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 7.9e-76 288.5 410 46.1
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 6.7e-75 285.4 361 46.3
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.9e-74 283.9 301 51.5
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 2.5e-74 283.5 342 50.3
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.3e-74 283.1 472 41.9
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 4.8e-73 279.3 385 45.2
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 8.2e-73 278.5 284 54.2
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 8.2e-73 278.5 379 45.6
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.8e-72 277.3 399 42.1
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.4e-72 276.9 388 42.5
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 3.1e-72 276.6 291 52.9
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 3.1e-72 276.6 420 44.3
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 6.9e-72 275.4 427 44.5
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.2e-71 274.6 456 41.4
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.6e-71 273.5 403 45.9
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 4.5e-71 272.7 406 46.3
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 5.9e-71 272.3 362 45.6
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 5.0e-70 269.2 296 50.3
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 8.5e-70 268.5 288 53.1
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.4e-69 267.7 458 38.6
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 2.5e-69 266.9 275 53.5
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 3.2e-69 266.5 462 39.8
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.2e-69 266.2 291 51.5
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 5.5e-69 265.8 405 44.4
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 2.1e-68 263.8 324 45.1
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.1e-68 263.8 289 49.5
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.1e-66 258.1 291 48.8
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 5.7e-66 255.8 283 51.2
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.8e-65 253.4 387 39.8
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 4.8e-65 252.7 283 50.9
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-64 251.5 400 43.0
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 8.5e-62 241.9 301 46.5
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 9.4e-61 238.4 306 45.1
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.0e-59 235.0 306 44.8
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 6.7e-59 232.3 303 44.6
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 4.4e-58 229.6 290 47.2
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.7e-58 229.2 247 50.6
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 8.2e-57 225.3 308 42.2
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.1e-56 224.9 420 38.8
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.2e-55 221.5 170 71.2
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.5e-55 221.1 170 70.6
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.0e-55 220.7 307 42.7
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.0e-55 220.7 272 48.2
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.3e-54 218.0 409 36.4
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 7.9e-52 208.8 265 46.4
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 7.0e-48 195.7 373 36.7
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.5e-46 189.1 445 33.3
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.5e-46 189.1 445 33.3
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 4.2e-45 186.4 239 44.8
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.6e-44 183.3 166 58.4
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.2e-42 178.3 453 32.7
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.8e-35 154.5 219 40.6
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.2e-33 147.5 425 28.9
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.8e-33 146.4 363 30.3
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.1e-32 145.2 314 35.4
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.4e-32 144.8 290 34.5
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 7.0e-32 142.5 319 31.7
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.8e-28 130.6 323 28.2
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 8.0e-28 129.0 322 32.0
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.0e-27 128.6 335 31.6
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-26 125.2 213 34.3
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.6e-26 124.0 364 29.9
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.6e-20 103.6 184 39.7
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 5.7e-18 96.3 162 42.6
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 4.9e-17 93.2 116 40.5
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.5e-15 87.0 180 32.2
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 5.9e-15 86.3 64 73.4
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.6e-14 82.8 81 53.1
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 4.0e-11 73.6 89 47.2


User provided reference genes

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