Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44833 Brassica carinata HOM05D007492 ORTHO05D009510 8.3e-46 186.8 103 100.0
C06p24390 Brassica napus HOM05D007492 ORTHO05D009510 8.3e-46 186.8 103 100.0
BolC6t37587H Brassica oleracea HOM05D007492 ORTHO05D009510 3.5e-44 181.4 103 98.1
BraA07t29999Z Brassica rapa HOM05D007492 ORTHO05D009510 3.5e-44 181.4 103 98.1
A07p23340 Brassica napus HOM05D007492 ORTHO05D009510 1.0e-43 179.9 103 97.1
BcaB02g07611 Brassica carinata HOM05D007492 ORTHO05D009510 6.8e-40 167.2 101 91.1
Sp5g05280 Schrenkiella parvula HOM05D007492 ORTHO05D009510 3.3e-34 148.3 99 83.8
AL5G38860 Arabidopsis lyrata HOM05D007492 ORTHO05D009510 8.9e-32 140.2 103 76.7
Carub.0005s2417 Capsella rubella HOM05D007492 ORTHO05D009510 1.2e-31 139.8 103 74.8
CARHR167510 Cardamine hirsuta HOM05D007492 ORTHO05D009510 2.0e-31 139.0 99 77.8
Aa31LG10G12190 Aethionema arabicum HOM05D007492 ORTHO05D009510 2.4e-24 115.5 99 63.6
Thhalv10006333m.g Eutrema salsugineum HOM05D007492 ORTHO05D009510 2.7e-20 102.1 65 83.1
AT3G57320 Arabidopsis thaliana HOM05D007492 ORTHO05D009510 9.6e-18 93.6 84 61.9
THA.LOC104802018 Tarenaya hassleriana HOM05D007492 ORTHO05D009510 2.1e-17 92.4 96 58.3
Gohir.D09G117400 Gossypium hirsutum HOM05D007492 ORTHO05D009510 2.4e-16 89.0 90 56.7
Gorai.006G135800 Gossypium raimondii HOM05D007492 ORTHO05D009510 9.0e-16 87.0 90 55.6
Thecc.05G151900 Theobroma cacao HOM05D007492 ORTHO05D009510 1.5e-15 86.3 92 54.3
CiPaw.10G035300 Carya illinoinensis HOM05D007492 ORTHO05D009510 2.0e-15 85.9 96 54.2
CANSAT80G1179 Cannabis sativa HOM05D007492 ORTHO05D009510 7.6e-15 84.0 88 56.8
Phvul.007G250800 Phaseolus vulgaris HOM05D007492 ORTHO05D009510 9.9e-15 83.6 90 53.3
Gohir.A09G121300 Gossypium hirsutum HOM05D007492 ORTHO05D009510 1.3e-14 83.2 90 54.4
Lalb_Chr21g0316561 Lupinus albus HOM05D007492 ORTHO05D009510 1.3e-14 83.2 95 50.5
Manes.08G052300 Manihot esculenta HOM05D007492 ORTHO05D009510 1.3e-14 83.2 95 51.6
Medtr1g052270 Medicago truncatula HOM05D007492 ORTHO05D009510 1.3e-14 83.2 96 51.0
Duzib106G1025 Durio zibethinus HOM05D007492 ORTHO05D009510 1.7e-14 82.8 92 50.0
Atru.chr1.1236 Acer truncatum HOM05D007492 ORTHO05D009510 2.2e-14 82.4 91 54.9
CANSAT80G0939 Cannabis sativa HOM05D007492 ORTHO05D009510 2.2e-14 82.4 88 55.7
Dinv39655 Davidia involucrata HOM05D007492 ORTHO05D009510 2.2e-14 82.4 97 52.6
Lj5g0022766 Lotus japonicus HOM05D007492 ORTHO05D009510 2.9e-14 82.0 92 54.3
arahy.Tifrunner.gnm1.ann1.7L65TE Arachis hypogaea HOM05D007492 ORTHO05D009510 3.8e-14 81.6 97 50.5
arahy.Tifrunner.gnm1.ann1.BXP26X Arachis hypogaea HOM05D007492 ORTHO05D009510 4.9e-14 81.3 95 51.6
Hund19134 Selenicereus undatus HOM05D007492 ORTHO05D009510 4.9e-14 81.3 101 46.5
Glyma.10G107400 Glycine max HOM05D007492 ORTHO05D009510 6.4e-14 80.9 90 54.4
Sc19g0006630 Simmondsia chinensis HOM05D007492 ORTHO05D009510 6.4e-14 80.9 90 53.3
Ca_12247_v3 Cicer arietinum L. HOM05D007492 ORTHO05D009510 1.4e-13 79.7 97 47.4
Prupe.7G053700 Prunus persica HOM05D007492 ORTHO05D009510 1.4e-13 79.7 106 50.0
AUR62026094 Chenopodium quinoa HOM05D007492 ORTHO05D009510 1.9e-13 79.3 99 48.5
Cfa016781 Carpinus fangiana HOM05D007492 ORTHO05D009510 3.2e-13 78.6 92 50.0
MD12G1082300 Malus domestica HOM05D007492 ORTHO05D009510 3.2e-13 78.6 94 48.9
Solyc04g150113.1 Solanum lycopersicum HOM05D007492 ORTHO05D009510 3.2e-13 78.6 101 49.5
TWI77G0158 Tripterygium wilfordii HOM05D007492 ORTHO05D009510 3.2e-13 78.6 99 48.5
Lsat_1_v5_gn_5_160860 Lactuca sativa HOM05D007492 ORTHO05D009510 4.2e-13 78.2 94 51.1
Nitab4.5_0000826g0210 Nicotiana tabacum HOM05D007492 ORTHO05D009510 4.2e-13 78.2 101 51.5
Psat0s33g0080 Pisum sativum HOM05D007492 ORTHO05D009510 5.4e-13 77.8 96 46.9
Potri.006G046800 Populus trichocarpa HOM05D007492 ORTHO05D009510 7.1e-13 77.4 103 45.6
QL07p003630 Quercus lobata HOM05D007492 ORTHO05D009510 7.1e-13 77.4 96 47.9
Rhsim04G0106100 Rhododendron simsii HOM05D007492 ORTHO05D009510 7.1e-13 77.4 101 51.5
TAR636G3489 Trochodendron aralioides HOM05D007492 ORTHO05D009510 9.3e-13 77.0 98 50.0
Oeu023131.1 Olea europaea HOM05D007492 ORTHO05D009510 1.2e-12 76.6 101 46.5
ECA248G1814 Erigeron canadensis HOM05D007492 ORTHO05D009510 1.6e-12 76.3 98 49.0
DCAR_013612 Daucus carota HOM05D007492 ORTHO05D009510 2.1e-12 75.9 96 50.0
PGSC0003DMG400012711 Solanum tuberosum HOM05D007492 ORTHO05D009510 2.1e-12 75.9 101 47.5
Sabra06G0032400 Salix brachista HOM05D007492 ORTHO05D009510 2.7e-12 75.5 103 45.6
MSTRG.19841 Avicennia marina HOM05D007492 ORTHO05D009510 3.5e-12 75.1 102 52.0
Cc06_g18080 Coffea canephora HOM05D007492 ORTHO05D009510 4.6e-12 74.7 100 49.0
Sopen04g008400 Solanum pennellii HOM05D007492 ORTHO05D009510 4.6e-12 74.7 101 48.5
Hma1.2p1_0005F.1_g004460 Hydrangea macrophylla HOM05D007492 ORTHO05D009510 7.8e-12 73.9 105 46.7
Sed0027371 Sechium edule HOM05D007492 ORTHO05D009510 7.8e-12 73.9 93 47.3
SalBow6G0030 Salvia bowleyana HOM05D007492 ORTHO05D009510 2.3e-11 72.4 102 49.0
SalBow6G0474 Salvia bowleyana HOM05D007492 ORTHO05D009510 2.3e-11 72.4 102 49.0
Cpa.g.sc1210.1 Carica papaya HOM05D007492 ORTHO05D009510 3.9e-11 71.6 79 54.4
CDE04G0450 Ceratophyllum demersum HOM05D007492 ORTHO05D009510 3.9e-11 71.6 95 49.5
Peaxi162Scf00130g00832 Petunia axillaris HOM05D007492 ORTHO05D009510 5.1e-11 71.2 100 45.0
HanXRQChr13g0395971 Helianthus annuus HOM05D007492 ORTHO05D009510 3.3e-10 68.6 96 46.9
ClCG04G003670 Citrullus lanatus HOM05D007492 ORTHO05D009510 4.3e-10 68.2 92 45.7
PGR004G0419 Punica granatum HOM05D007492 ORTHO05D009510 9.6e-10 67.0 99 46.5
TPR.G19665 Trifolium pratense HOM05D007492 ORTHO05D009510 9.6e-10 67.0 112 40.2
Ciclev10005969m.g Citrus clementina HOM05D007492 ORTHO05D009510 1.3e-09 66.6 130 40.8
Actinidia38130 Actinidia chinensis HOM05D007492 ORTHO05D009510 1.6e-09 66.2 101 43.6
ATR0721G123 Amborella trichopoda HOM05D007492 ORTHO05D009510 2.1e-09 65.9 100 47.0
SGA_v2.0_scaffold105G30374 Striga asiatica HOM05D007492 ORTHO05D009510 2.8e-09 65.5 103 47.6
Migut.J01728 Erythranthe guttata HOM05D007492 ORTHO05D009510 3.6e-09 65.1 99 46.5
HPP92_012476 Vanilla planifolia HOM05D007492 ORTHO05D009510 3.6e-09 65.1 103 44.7
FAN02G2710 Fragaria x ananassa HOM05D007492 ORTHO05D009510 4.8e-09 64.7 93 45.2
HPP92_012551 Vanilla planifolia HOM05D007492 ORTHO05D009510 1.1e-08 63.5 103 43.7
FAN05G0111 Fragaria x ananassa HOM05D007492 ORTHO05D009510 4.0e-08 61.6 93 44.1
FAN14G3877 Fragaria x ananassa HOM05D007492 ORTHO05D009510 4.0e-08 61.6 93 44.1
Os07g0661700 Oryza sativa ssp. japonica HOM05D007492 ORTHO05D009510 4.0e-08 61.6 96 43.8
GSVIVG01033234001 Vitis vinifera HOM05D007492 ORTHO05D009510 5.3e-08 61.2 83 49.4
RcHm_v2.0_Chr3g0483561 Rosa chinensis HOM05D007492 ORTHO05D009510 6.9e-08 60.8 93 43.0
Eucgr.K01714 Eucalyptus grandis HOM05D007492 ORTHO05D009510 1.2e-07 60.1 92 41.3
Eucgr.K02018 Eucalyptus grandis HOM05D007492 ORTHO05D009510 1.2e-07 60.1 92 41.3
vmacro09057 Vaccinium macrocarpon HOM05D007492 ORTHO05D009510 1.2e-07 60.1 86 50.0
Zm00001eb329920 Zea mays HOM05D007492 ORTHO05D009510 2.6e-07 58.9 95 41.1
AagrBONN_evm.TU.Sc2ySwM_228.377 Anthoceros agrestis HOM05D007492 ORTHO05D009510 4.5e-07 58.2 99 43.4
Haze_19797 Corylus avellana HOM05D007492 ORTHO05D009510 7.6e-07 57.4 119 34.5
Haze_19793 Corylus avellana HOM05D007492 ORTHO05D009510 9.9e-07 57.0 119 34.5
Pp3c18_6860 Physcomitrium patens HOM05D007492 ORTHO05D009510 1.7e-06 56.2 97 40.2
Aqoxy2G00252 Aquilegia oxysepala HOM05D007492 ORTHO05D009510 2.2e-06 55.8 97 43.3
Nitab4.5_0001618g0280 Nicotiana tabacum HOM05D007492 ORTHO05D009510 2.9e-06 55.5 80 50.0
EL10Ac3g07135 Beta vulgaris HOM05D007492 ORTHO05D009510 3.8e-06 55.1 99 37.4
Mapoly0061s0071 Marchantia polymorpha HOM05D007492 ORTHO05D009510 6.4e-06 54.3 103 38.8


User provided reference genes

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