Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 6.2e-64 247.3 124 100.0
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 2.5e-52 208.8 113 93.8
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 2.5e-52 208.8 113 93.8
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 2.5e-52 208.8 113 93.8
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 4.2e-52 208.0 113 92.9
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 3.5e-51 204.9 113 94.7
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 3.5e-51 204.9 113 94.7
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.1e-47 193.4 113 84.1
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.0e-45 186.8 113 83.2
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 3.8e-45 184.9 113 80.5
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 6.5e-45 184.1 113 83.2
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.4e-44 183.0 103 90.3
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 7.2e-44 180.6 113 82.3
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.1e-43 179.1 113 80.5
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 3.6e-43 178.3 113 84.1
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.6e-43 177.9 117 78.6
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 7.2e-36 154.1 134 65.7
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 6.1e-35 151.0 113 69.9
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 7.9e-35 150.6 113 68.1
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.0e-34 150.2 113 68.1
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.4e-34 149.8 113 70.8
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 2.3e-34 149.1 113 68.1
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 8.8e-34 147.1 113 67.3
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.0e-33 146.0 113 66.4
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.6e-33 145.6 113 68.1
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.3e-33 145.2 134 61.2
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.3e-33 145.2 134 61.2
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 3.3e-33 145.2 113 63.7
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 3.3e-33 145.2 113 65.5
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 4.4e-33 144.8 118 65.3
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 5.7e-33 144.4 113 65.5
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 9.7e-33 143.7 113 67.3
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 9.7e-33 143.7 113 67.3
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 9.7e-33 143.7 113 67.3
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.3e-32 143.3 113 64.6
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.7e-32 142.9 113 67.3
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.7e-32 142.9 117 62.4
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.2e-32 142.5 122 62.3
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 2.2e-32 142.5 113 64.6
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 2.2e-32 142.5 118 63.6
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 2.2e-32 142.5 113 67.3
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.7e-32 141.7 113 63.7
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.7e-32 141.7 113 63.7
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.7e-32 141.7 113 63.7
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 6.3e-32 141.0 113 65.5
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 6.3e-32 141.0 113 66.4
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 8.2e-32 140.6 113 63.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.2e-32 140.6 113 63.7
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.8e-31 139.4 113 63.7
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.8e-31 139.4 113 63.7
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.8e-31 139.4 119 63.0
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 2.4e-31 139.0 113 63.7
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 2.4e-31 139.0 132 57.6
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.4e-31 139.0 113 62.8
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.4e-31 139.0 111 64.9
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 2.4e-31 139.0 111 63.1
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 4.1e-31 138.3 119 62.2
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 7.0e-31 137.5 113 61.1
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 7.0e-31 137.5 113 61.1
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 7.0e-31 137.5 115 58.3
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 7.0e-31 137.5 118 61.0
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 7.0e-31 137.5 113 62.8
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 9.1e-31 137.1 113 66.4
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 9.1e-31 137.1 113 58.4
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.2e-30 136.7 106 67.0
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.2e-30 136.7 111 62.2
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.6e-30 136.3 109 63.3
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 2.0e-30 136.0 116 61.2
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 2.0e-30 136.0 116 59.5
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.6e-30 135.6 117 58.1
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 2.6e-30 135.6 113 61.9
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-30 135.2 117 57.3
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 3.5e-30 135.2 118 60.2
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 5.9e-30 134.4 112 60.7
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.9e-30 134.4 113 61.9
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 5.9e-30 134.4 116 58.6
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 1.0e-29 133.7 113 61.1
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.7e-29 132.9 132 54.5
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.7e-29 132.9 111 61.3
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.7e-29 132.9 111 61.3
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.7e-29 132.9 111 61.3
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 2.2e-29 132.5 130 56.9
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 2.2e-29 132.5 133 57.9
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 2.9e-29 132.1 113 62.8
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 2.9e-29 132.1 113 61.9
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 2.9e-29 132.1 118 55.1
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 2.9e-29 132.1 115 57.4
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 3.8e-29 131.7 116 57.8
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 3.8e-29 131.7 116 56.0
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 3.8e-29 131.7 111 62.2
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 5.0e-29 131.3 121 56.2
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 6.5e-29 131.0 116 59.5
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 1.5e-28 129.8 115 55.7
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.9e-28 129.4 118 55.9
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 2.5e-28 129.0 117 55.6
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 2.5e-28 129.0 112 57.1
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 7.2e-28 127.5 112 60.7
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 6.1e-27 124.4 120 54.2
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.4e-26 123.2 134 52.2
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 1.4e-26 123.2 97 66.0
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.4e-26 123.2 112 58.0
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.7e-26 120.9 108 59.3
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.5e-25 119.8 104 60.6
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 4.4e-25 118.2 113 58.4
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 5.7e-25 117.9 107 57.9
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 9.7e-25 117.1 99 60.6
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.7e-24 116.3 113 57.5
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 2.8e-24 115.5 117 58.1
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 3.7e-24 115.2 111 51.4
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 2.7e-22 109.0 96 55.2
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 4.5e-22 108.2 100 57.0
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.5e-22 108.2 105 54.3
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 2.9e-21 105.5 111 53.2
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 6.5e-21 104.4 90 68.9
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 1.5e-20 103.2 111 54.1
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 3.2e-20 102.1 91 56.0
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 5.5e-20 101.3 97 54.6
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.7e-19 99.0 113 53.1
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 3.6e-19 98.6 88 68.2
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.4e-17 92.0 84 56.0
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.7e-16 88.6 113 43.4
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.6e-14 83.2 122 41.8
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.3e-13 80.1 107 42.1
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 2.9e-13 79.0 50 70.0
BcaC07g40045 Brassica carinata HOM05D001925 ORTHO05D005701 3.8e-13 78.6 58 74.1
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.1e-12 77.0 115 39.1
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 4.2e-12 75.1 109 40.4
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.2e-11 73.6 120 35.8
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 4.0e-10 68.6 119 33.6
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.3e-08 63.5 104 37.5
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-08 63.2 36 80.6
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-08 63.2 36 80.6


User provided reference genes

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