Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p23550 Brassica napus HOM05D010499 ORTHO05D013671 0.0e+00 2759.9 1488 100.0
BolC6t37526H Brassica oleracea HOM05D010499 ORTHO05D013671 0.0e+00 2692.1 1510 97.0
BcaC08g44783 Brassica carinata HOM05D010499 ORTHO05D013671 0.0e+00 2682.9 1499 97.5
A07p22920 Brassica napus HOM05D010499 ORTHO05D013671 0.0e+00 2103.9 1538 79.6
BraA07t29958Z Brassica rapa HOM05D010499 ORTHO05D013671 0.0e+00 2093.9 1524 80.2
BcaB02g07653 Brassica carinata HOM05D010499 ORTHO05D013671 0.0e+00 2003.0 1569 75.0
Sp5g06040 Schrenkiella parvula HOM05D010499 ORTHO05D013671 0.0e+00 1731.1 1636 65.8
Thhalv10005743m.g Eutrema salsugineum HOM05D010499 ORTHO05D013671 0.0e+00 1468.8 1625 59.8
AL5G37740 Arabidopsis lyrata HOM05D010499 ORTHO05D013671 0.0e+00 1387.5 1584 57.3
AT3G56410 Arabidopsis thaliana HOM05D010499 ORTHO05D013671 0.0e+00 1362.4 1588 56.7
CARHR166540 Cardamine hirsuta HOM05D010499 ORTHO05D013671 0.0e+00 1150.6 1585 51.7
Carub.0005s2319 Capsella rubella HOM05D010499 ORTHO05D013671 7.8e-286 988.0 1599 45.5
Aa31LG10G11300 Aethionema arabicum HOM05D010499 ORTHO05D013671 1.2e-262 911.0 1609 45.6
THA.LOC104824598 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 2.0e-71 275.8 600 38.7
A09p49360 Brassica napus HOM05D010499 ORTHO05D023864 6.3e-62 244.2 571 38.2
THA.LOC104814291 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 7.5e-55 220.7 569 35.3
BolC8t50793H Brassica oleracea HOM05D010499 ORTHO05D023864 3.0e-35 155.6 340 38.5
C08p31720 Brassica napus HOM05D010499 ORTHO05D023864 5.2e-32 144.8 376 35.9
BcaC07g39955 Brassica carinata HOM05D010499 ORTHO05D023864 5.4e-29 134.8 247 41.3
Aa31LG3G3130 Aethionema arabicum HOM05D010499 ORTHO05D013671 4.2e-13 82.0 78 55.1
BraA09t40389Z Brassica rapa HOM05D010499 ORTHO05D023864 5.4e-13 81.6 77 54.5
CARHR208070 Cardamine hirsuta HOM05D010812 ORTHO05D004682 3.5e-12 79.0 510 23.7
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 3.0e-11 75.9 136 35.3
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 8.7e-11 74.3 135 36.3
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 1.9e-10 73.2 114 43.0
Oeu006068.1 Olea europaea HOM05D005345 ORTHO05D004682 9.6e-10 70.9 74 51.4
Oeu064002.1 Olea europaea HOM05D005345 ORTHO05D004682 2.1e-09 69.7 103 39.8
PGSC0003DMG400022956 Solanum tuberosum HOM05D005345 ORTHO05D004682 4.8e-09 68.6 158 32.3
CSS0033913 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 8.1e-09 67.8 144 33.3
COL.COLO4_19477 Corchorus olitorius HOM05D005345 ORTHO05D004682 8.1e-09 67.8 111 42.3
C04p01570 Brassica napus HOM05D002045 ORTHO05D002014 1.1e-08 67.4 367 23.2
BolC4t21808H Brassica oleracea HOM05D002045 ORTHO05D002014 1.1e-08 67.4 367 23.7
THA.LOC104802062 Tarenaya hassleriana HOM05D002045 ORTHO05D002014 1.1e-08 67.4 484 24.2
Dinv34499 Davidia involucrata HOM05D005345 ORTHO05D004682 2.4e-08 66.2 117 35.9
THA.LOC104816507 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 2.4e-08 66.2 254 27.6
ClCG11G005600 Citrullus lanatus HOM05D005345 ORTHO05D004682 3.1e-08 65.9 115 36.5
CsaV3_6G002400 Cucumis sativus L. HOM05D005345 ORTHO05D004682 3.1e-08 65.9 70 42.9
Aa31LG11G6050 Aethionema arabicum HOM05D010812 ORTHO05D004682 5.3e-08 65.1 247 28.3
CDE04G0305 Ceratophyllum demersum HOM05D025459 ORTHO05D004682 6.9e-08 64.7 79 40.5
Ciclev10030619m.g Citrus clementina HOM05D005345 ORTHO05D004682 6.9e-08 64.7 120 35.8
Haze_17372 Corylus avellana HOM05D005345 ORTHO05D004682 6.9e-08 64.7 126 36.5
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 6.9e-08 64.7 78 48.7
Psat2g061880 Pisum sativum HOM05D005345 ORTHO05D004682 6.9e-08 64.7 141 34.8
Oeu018746.1 Olea europaea HOM05D005345 ORTHO05D004682 9.0e-08 64.3 103 37.9
Oeu018747.2 Olea europaea HOM05D005345 ORTHO05D004682 9.0e-08 64.3 103 37.9
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 9.0e-08 64.3 176 32.4
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 9.0e-08 64.3 66 43.9
TPR.G33944 Trifolium pratense HOM05D005345 ORTHO05D004682 9.0e-08 64.3 141 31.9
Dinv21859 Davidia involucrata HOM05D005345 ORTHO05D004682 1.2e-07 63.9 185 32.4
Prupe.2G184400 Prunus persica HOM05D002045 ORTHO05D002014 1.2e-07 63.9 105 38.1
Sopen03g025560 Solanum pennellii HOM05D005345 ORTHO05D004682 1.2e-07 63.9 194 30.9
Rhsim03G0153800 Rhododendron simsii HOM05D005345 ORTHO05D004682 2.6e-07 62.8 202 29.2
Gorai.011G206300 Gossypium raimondii HOM05D005345 ORTHO05D004682 4.5e-07 62.0 173 31.8
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 4.5e-07 62.0 236 30.1
Sc01g0002940 Simmondsia chinensis HOM05D002045 ORTHO05D002014 4.5e-07 62.0 95 36.8
vmacro09953 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 4.5e-07 62.0 82 37.8
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 5.8e-07 61.6 188 30.9
arahy.Tifrunner.gnm1.ann1.RJBH5A Arachis hypogaea HOM05D002045 ORTHO05D002014 7.6e-07 61.2 79 40.5
BcaB01g05942 Brassica carinata HOM05D010812 ORTHO05D004682 7.6e-07 61.2 235 29.4
C03p02570 Brassica napus HOM05D010812 ORTHO05D004682 7.6e-07 61.2 235 29.4
BolC3t12809H Brassica oleracea HOM05D010812 ORTHO05D004682 7.6e-07 61.2 235 29.4
arahy.Tifrunner.gnm1.ann1.6FX6NP Arachis hypogaea HOM05D002045 ORTHO05D002014 9.9e-07 60.8 79 40.5
A03p02230 Brassica napus HOM05D010812 ORTHO05D004682 9.9e-07 60.8 204 30.4
BraA03t09587Z Brassica rapa HOM05D010812 ORTHO05D004682 9.9e-07 60.8 204 30.4
MELO3C020021.2 Cucumis melo HOM05D005345 ORTHO05D004682 9.9e-07 60.8 70 41.4
Manes.07G142000 Manihot esculenta HOM05D005345 ORTHO05D004682 9.9e-07 60.8 279 26.2
arahy.Tifrunner.gnm1.ann1.DZPX8Q Arachis hypogaea HOM05D005345 ORTHO05D004682 1.3e-06 60.5 108 37.0
arahy.Tifrunner.gnm1.ann1.E2ZVAX Arachis hypogaea HOM05D005345 ORTHO05D004682 1.3e-06 60.5 108 37.0
CiPaw.01G307600 Carya illinoinensis HOM05D005345 ORTHO05D004682 1.3e-06 60.5 84 41.7
MD07G1146100 Malus domestica HOM05D002045 ORTHO05D002014 1.3e-06 60.5 54 50.0
Nitab4.5_0005979g0010 Nicotiana tabacum HOM05D005345 ORTHO05D004682 1.7e-06 60.1 199 28.6
Sed0004419 Sechium edule HOM05D005345 ORTHO05D004682 1.7e-06 60.1 152 30.9
CAN.G1229.5 Capsicum annuum HOM05D005345 ORTHO05D004682 2.2e-06 59.7 239 30.5
Glyma.07G057700 Glycine max HOM05D002045 ORTHO05D002014 2.2e-06 59.7 152 34.2
Nitab4.5_0000171g0310 Nicotiana tabacum HOM05D005345 ORTHO05D004682 2.2e-06 59.7 240 28.8
Oeu039387.1 Olea europaea HOM05D005345 ORTHO05D004682 2.2e-06 59.7 181 28.7
DCAR_020155 Daucus carota HOM05D005345 ORTHO05D004682 2.9e-06 59.3 127 33.1
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 3.8e-06 58.9 119 37.0
TWI34G1380 Tripterygium wilfordii HOM05D002045 ORTHO05D002014 3.8e-06 58.9 87 39.1
GSVIVG01032655001 Vitis vinifera HOM05D005345 ORTHO05D004682 3.8e-06 58.9 123 35.8
Haze_15628 Corylus avellana HOM05D002045 ORTHO05D002014 4.9e-06 58.5 105 37.1
TAR369G0882 Trochodendron aralioides HOM05D005345 ORTHO05D004682 4.9e-06 58.5 67 40.3
Cfa003827 Carpinus fangiana HOM05D002045 ORTHO05D002014 6.4e-06 58.2 105 37.1
Phvul.009G042600 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 6.4e-06 58.2 146 33.6
PGR044G0353 Punica granatum HOM05D005345 ORTHO05D004682 6.4e-06 58.2 115 36.5
Hund13436 Selenicereus undatus HOM05D005345 ORTHO05D004682 6.4e-06 58.2 122 29.5


User provided reference genes

Program Settings