Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p22450 Brassica napus HOM05D001588 ORTHO05D002975 2.9e-79 298.5 150 100.0
A01p42070 Brassica napus HOM05D001588 ORTHO05D002975 4.2e-30 135.2 185 47.6
BcaB04g21231 Brassica carinata HOM05D001588 ORTHO05D002975 9.3e-30 134.0 183 49.7
Sp3g08360 Schrenkiella parvula HOM05D001588 ORTHO05D002975 1.8e-28 129.8 183 47.0
BcaB03g11575 Brassica carinata HOM05D001588 ORTHO05D002975 2.3e-28 129.4 183 47.0
A03p35710 Brassica napus HOM05D001588 ORTHO05D002975 5.1e-28 128.3 183 47.0
C05p58030 Brassica napus HOM05D001588 ORTHO05D002975 6.7e-28 127.9 183 47.0
BolC5t34459H Brassica oleracea HOM05D001588 ORTHO05D002975 6.7e-28 127.9 183 47.0
Aa31LG3G2580 Aethionema arabicum HOM05D001588 ORTHO05D002975 8.7e-28 127.5 183 45.9
C03p43380 Brassica napus HOM05D001588 ORTHO05D002975 2.5e-27 125.9 183 44.8
BcaC01g04258 Brassica carinata HOM05D001588 ORTHO05D002975 4.3e-27 125.2 183 44.8
BolC3t16609H Brassica oleracea HOM05D001588 ORTHO05D002975 4.3e-27 125.2 183 44.8
BraA03t12745Z Brassica rapa HOM05D001588 ORTHO05D002975 4.3e-27 125.2 183 46.4
BraA05t22691Z Brassica rapa HOM05D001588 ORTHO05D002975 5.6e-27 124.8 183 46.4
AT3G10050 Arabidopsis thaliana HOM05D001588 ORTHO05D002975 2.1e-26 122.9 183 42.6
A05p39000 Brassica napus HOM05D001588 ORTHO05D002975 2.1e-26 122.9 183 45.9
AL3G21380 Arabidopsis lyrata HOM05D001588 ORTHO05D002975 3.7e-26 122.1 183 42.6
Carub.0003s0915 Capsella rubella HOM05D001588 ORTHO05D002975 1.1e-25 120.6 183 43.7
Thhalv10020316m.g Eutrema salsugineum HOM05D001588 ORTHO05D002975 1.1e-25 120.6 183 44.3
CARHR084550 Cardamine hirsuta HOM05D001588 ORTHO05D002975 1.8e-25 119.8 183 43.2
Cpa.g.sc5.116 Carica papaya HOM05D001588 ORTHO05D002975 2.6e-24 115.9 183 42.6
Manes.08G017400 Manihot esculenta HOM05D001588 ORTHO05D002975 1.0e-23 114.0 183 41.0
BolC1t05423H Brassica oleracea HOM05D001588 ORTHO05D002975 1.7e-23 113.2 177 43.5
BraA01t04276Z Brassica rapa HOM05D001588 ORTHO05D002975 1.7e-23 113.2 177 43.5
BcaC09g48118 Brassica carinata HOM05D001588 ORTHO05D002975 2.2e-23 112.8 175 44.6
THA.LOC104823221 Tarenaya hassleriana HOM05D001588 ORTHO05D002975 2.2e-23 112.8 183 42.6
Ciclev10011319m.g Citrus clementina HOM05D001588 ORTHO05D002975 3.8e-23 112.1 183 40.4
Lalb_Chr09g0325431 Lupinus albus HOM05D001588 ORTHO05D002975 4.9e-23 111.7 182 40.7
Sabra06G0093100 Salix brachista HOM05D001588 ORTHO05D002975 6.5e-23 111.3 183 40.4
THA.LOC104816384 Tarenaya hassleriana HOM05D001588 ORTHO05D002975 1.1e-22 110.5 183 42.1
Glyma.10G064000 Glycine max HOM05D001588 ORTHO05D002975 2.5e-22 109.4 183 41.5
MD12G1101800 Malus domestica HOM05D001588 ORTHO05D002975 2.5e-22 109.4 183 39.3
Gohir.A09G143000 Gossypium hirsutum HOM05D001588 ORTHO05D002975 3.2e-22 109.0 182 40.7
Gohir.D09G139200 Gossypium hirsutum HOM05D001588 ORTHO05D002975 5.5e-22 108.2 182 40.7
Phvul.007G225400 Phaseolus vulgaris HOM05D001588 ORTHO05D002975 9.3e-22 107.5 183 41.0
Cfa016497 Carpinus fangiana HOM05D001588 ORTHO05D002975 1.2e-21 107.1 183 41.0
Gorai.006G159700 Gossypium raimondii HOM05D001588 ORTHO05D002975 1.6e-21 106.7 182 40.1
Lj1g0002909 Lotus japonicus HOM05D001588 ORTHO05D002975 1.6e-21 106.7 183 38.8
Manes.09G047609 Manihot esculenta HOM05D001588 ORTHO05D002975 1.6e-21 106.7 183 40.4
FvH4_6g17350 Fragaria vesca HOM05D001588 ORTHO05D002975 2.1e-21 106.3 183 39.3
FAN05G0064 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.1e-21 106.3 183 39.3
FAN05G2152 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.1e-21 106.3 183 39.3
FAN09G2648 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.1e-21 106.3 183 39.3
FAN14G1509 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.1e-21 106.3 183 39.3
arahy.Tifrunner.gnm1.ann1.1YXT4F Arachis hypogaea HOM05D001588 ORTHO05D002975 2.7e-21 105.9 183 39.9
arahy.Tifrunner.gnm1.ann1.32P3WE Arachis hypogaea HOM05D001588 ORTHO05D002975 2.7e-21 105.9 183 39.9
ClCG04G009610 Citrullus lanatus HOM05D001588 ORTHO05D002975 3.5e-21 105.5 182 38.5
FAN02G0909 Fragaria x ananassa HOM05D001588 ORTHO05D002975 3.5e-21 105.5 183 39.3
Potri.006G118400 Populus trichocarpa HOM05D001588 ORTHO05D002975 3.5e-21 105.5 183 39.3
RcHm_v2.0_Chr3g0471501 Rosa chinensis HOM05D001588 ORTHO05D002975 3.5e-21 105.5 183 39.3
Sed0001057 Sechium edule HOM05D001588 ORTHO05D002975 3.5e-21 105.5 182 38.5
VMungo0720G1728 Vigna mungo HOM05D001588 ORTHO05D002975 3.5e-21 105.5 183 39.3
Atru.chr8.1676 Acer truncatum HOM05D001588 ORTHO05D002975 6.0e-21 104.8 183 39.9
FAN05G5823 Fragaria x ananassa HOM05D001588 ORTHO05D002975 6.0e-21 104.8 183 38.8
PGR142G1536 Punica granatum HOM05D001588 ORTHO05D002975 6.0e-21 104.8 182 39.0
Duzib106G0304 Durio zibethinus HOM05D001588 ORTHO05D002975 7.9e-21 104.4 183 40.4
QL07p041178 Quercus lobata HOM05D001588 ORTHO05D002975 7.9e-21 104.4 182 37.4
Thecc.05G076800 Theobroma cacao HOM05D001588 ORTHO05D002975 7.9e-21 104.4 183 41.0
TWI53G0599 Tripterygium wilfordii HOM05D001588 ORTHO05D002975 1.0e-20 104.0 183 39.9
CAN.G541.22 Capsicum annuum HOM05D001588 ORTHO05D002975 1.3e-20 103.6 167 38.9
CiPaw.09G006100 Carya illinoinensis HOM05D001588 ORTHO05D002975 1.8e-20 103.2 182 39.0
GSVIVG01033731001 Vitis vinifera HOM05D001588 ORTHO05D002975 1.8e-20 103.2 184 37.5
COL.COLO4_22266 Corchorus olitorius HOM05D001588 ORTHO05D002975 2.3e-20 102.8 183 39.9
Gohir.D04G106300 Gossypium hirsutum HOM05D001588 ORTHO05D002975 2.3e-20 102.8 183 39.9
Lj5g0023234 Lotus japonicus HOM05D001588 ORTHO05D002975 2.3e-20 102.8 183 38.3
Dinv35843 Davidia involucrata HOM05D001588 ORTHO05D002975 3.0e-20 102.4 183 39.9
Glyma.13G148600 Glycine max HOM05D001588 ORTHO05D002975 3.0e-20 102.4 183 38.3
Peaxi162Scf00110g00912 Petunia axillaris HOM05D001588 ORTHO05D002975 3.0e-20 102.4 169 39.1
MELO3C024500.2 Cucumis melo HOM05D001588 ORTHO05D002975 5.1e-20 101.7 182 36.3
CsaV3_6G040240 Cucumis sativus L. HOM05D001588 ORTHO05D002975 5.1e-20 101.7 182 36.3
Prupe.7G122000 Prunus persica HOM05D001588 ORTHO05D002975 1.1e-19 100.5 183 39.9
TWI77G0360 Tripterygium wilfordii HOM05D001588 ORTHO05D002975 1.1e-19 100.5 182 39.0
Eucgr.A01588 Eucalyptus grandis HOM05D001588 ORTHO05D002975 1.5e-19 100.1 182 38.5
Hma1.2p1_0564F.1_g179110 Hydrangea macrophylla HOM05D001588 ORTHO05D002975 5.7e-19 98.2 186 38.2
RcHm_v2.0_Chr4g0394271 Rosa chinensis HOM05D001588 ORTHO05D002975 7.4e-19 97.8 167 39.5
Actinidia31303 Actinidia chinensis HOM05D001588 ORTHO05D002975 9.7e-19 97.4 184 37.5
CSS0025803 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D002975 9.7e-19 97.4 184 36.4
CSS0010158 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D002975 1.3e-18 97.1 184 36.4
Medtr1g061800 Medicago truncatula HOM05D001588 ORTHO05D002975 1.3e-18 97.1 183 36.1
Sopen10g033220 Solanum pennellii HOM05D001588 ORTHO05D002975 2.2e-18 96.3 184 35.3
Solyc10g083760.3 Solanum lycopersicum HOM05D001588 ORTHO05D002975 2.8e-18 95.9 184 35.9
Ca_11602_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 6.3e-18 94.7 183 37.2
Nitab4.5_0000132g0410 Nicotiana tabacum HOM05D001588 ORTHO05D002975 6.3e-18 94.7 184 35.9
PGSC0003DMG400028273 Solanum tuberosum HOM05D001588 ORTHO05D002975 6.3e-18 94.7 184 35.3
Lalb_Chr05g0215691 Lupinus albus HOM05D001588 ORTHO05D002975 8.2e-18 94.4 179 36.3
Lj3A1008G68 Lonicera japonica HOM05D001588 ORTHO05D002975 1.1e-17 94.0 183 36.6
CANSAT80G1765 Cannabis sativa HOM05D001588 ORTHO05D002975 1.4e-17 93.6 171 38.6
MSTRG.26663 Avicennia marina HOM05D001588 ORTHO05D002975 1.8e-17 93.2 184 36.4
Haze_19500 Corylus avellana HOM05D001588 ORTHO05D001212 1.8e-17 93.2 172 37.2
Migut.L01735 Erythranthe guttata HOM05D001588 ORTHO05D002975 1.8e-17 93.2 184 37.0
vmacro08808 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 2.4e-17 92.8 184 36.4
HanXRQChr11g0350771 Helianthus annuus HOM05D001588 ORTHO05D002975 3.1e-17 92.4 184 34.8
HanXRQChr13g0400241 Helianthus annuus HOM05D001588 ORTHO05D002975 4.1e-17 92.0 184 33.7
ECA233G3154 Erigeron canadensis HOM05D001588 ORTHO05D002975 5.3e-17 91.7 184 35.3
Nitab4.5_0000963g0020 Nicotiana tabacum HOM05D001588 ORTHO05D002975 5.3e-17 91.7 184 33.7
vmacro11209 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 5.3e-17 91.7 184 35.3
Lsat_1_v5_gn_6_29060 Lactuca sativa HOM05D001588 ORTHO05D002975 9.0e-17 90.9 184 34.2
Ca_10489_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 1.2e-16 90.5 179 34.6
CDE02G4744 Ceratophyllum demersum HOM05D001588 ORTHO05D002975 1.5e-16 90.1 186 33.9
Oeu031870.1 Olea europaea HOM05D001588 ORTHO05D002975 1.5e-16 90.1 188 36.2
Ah.08g211180 Amaranthus hybridus HOM05D001588 ORTHO05D002975 2.0e-16 89.7 184 34.2
ATR0697G150 Amborella trichopoda HOM05D001588 ORTHO05D002975 2.0e-16 89.7 186 34.9
MSTRG.19212 Avicennia marina HOM05D001588 ORTHO05D002975 2.0e-16 89.7 184 37.0
TAR633G2163 Trochodendron aralioides HOM05D001588 ORTHO05D002975 2.0e-16 89.7 184 34.8
Hma1.2p1_1578F.1_g291790 Hydrangea macrophylla HOM05D001588 ORTHO05D002975 2.6e-16 89.4 186 34.9
DCAR_017643 Daucus carota HOM05D001588 ORTHO05D002975 3.4e-16 89.0 165 37.0
HanXRQChr02g0052141 Helianthus annuus HOM05D001588 ORTHO05D002975 3.4e-16 89.0 184 35.3
Peaxi162Scf00163g00215 Petunia axillaris HOM05D001588 ORTHO05D002975 3.4e-16 89.0 184 33.7
Rhsim04G0137800 Rhododendron simsii HOM05D001588 ORTHO05D002975 3.4e-16 89.0 184 34.8
RhsimUnG0231900 Rhododendron simsii HOM05D001588 ORTHO05D002975 3.4e-16 89.0 184 34.8
Sc20g0005880 Simmondsia chinensis HOM05D001588 ORTHO05D002975 3.4e-16 89.0 184 33.7
TAR623G1568 Trochodendron aralioides HOM05D001588 ORTHO05D002975 3.4e-16 89.0 184 34.2
Ca_11567_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 4.5e-16 88.6 180 35.6
Psat6g077520 Pisum sativum HOM05D001588 ORTHO05D002975 4.5e-16 88.6 183 35.0
Ah.15g091270 Amaranthus hybridus HOM05D001588 ORTHO05D002975 1.0e-15 87.4 175 36.6
PSO339G2383 Papaver somniferum HOM05D001588 ORTHO05D002975 1.3e-15 87.0 184 34.2
ECA248G3418 Erigeron canadensis HOM05D001588 ORTHO05D002975 1.7e-15 86.7 184 32.6
Migut.J00482 Erythranthe guttata HOM05D001588 ORTHO05D002975 1.7e-15 86.7 184 35.9
Lsat_1_v5_gn_1_51101 Lactuca sativa HOM05D001588 ORTHO05D002975 2.9e-15 85.9 169 34.3
Hund29355 Selenicereus undatus HOM05D001588 ORTHO05D002975 2.9e-15 85.9 183 35.0
Hund29356 Selenicereus undatus HOM05D001588 ORTHO05D002975 2.9e-15 85.9 183 35.0
AUR62040179 Chenopodium quinoa HOM05D001588 ORTHO05D002975 3.8e-15 85.5 184 33.7
AUR62040181 Chenopodium quinoa HOM05D001588 ORTHO05D002975 3.8e-15 85.5 184 33.7
Os03g0713000 Oryza sativa ssp. japonica HOM05D001588 ORTHO05D002975 3.8e-15 85.5 182 33.0
Gohir.A04G067614 Gossypium hirsutum HOM05D001588 ORTHO05D002975 6.5e-15 84.7 107 46.7
CDE02G3443 Ceratophyllum demersum HOM05D001588 ORTHO05D002975 8.5e-15 84.3 204 30.9
PSO801G0202 Papaver somniferum HOM05D001588 ORTHO05D002975 1.1e-14 84.0 184 33.7
Nitab4.5_0000132g0130 Nicotiana tabacum HOM05D001588 ORTHO05D002975 1.9e-14 83.2 154 37.7
HPP92_017794 Vanilla planifolia HOM05D001588 ORTHO05D002975 1.9e-14 83.2 183 33.3
Zm00001eb216240 Zea mays HOM05D001588 ORTHO05D002975 2.5e-14 82.8 182 33.0
Sed0008569 Sechium edule HOM05D001588 ORTHO05D002975 3.2e-14 82.4 176 34.1
Zm00001eb055020 Zea mays HOM05D001588 ORTHO05D002975 3.2e-14 82.4 182 33.0
unitig_746.g26768 Utricularia gibba HOM05D001588 ORTHO05D002975 4.2e-14 82.0 184 33.7
BcaC07g39732 Brassica carinata HOM05D001588 ORTHO05D002975 5.5e-14 81.6 59 71.2
AUR62037925 Chenopodium quinoa HOM05D001588 ORTHO05D002975 5.5e-14 81.6 184 33.2
Gorai.009G410200 Gossypium raimondii HOM05D001588 ORTHO05D002975 5.5e-14 81.6 107 45.8
Peaxi162Scf00146g00320 Petunia axillaris HOM05D001588 ORTHO05D002975 5.5e-14 81.6 222 29.7
SGA_v2.0_scaffold75G24813 Striga asiatica HOM05D001588 ORTHO05D002975 5.5e-14 81.6 215 32.1
Sed0011255 Sechium edule HOM05D001588 ORTHO05D002975 7.2e-14 81.3 106 41.5
HanXRQChr01g0028181 Helianthus annuus HOM05D001588 ORTHO05D002975 1.2e-13 80.5 182 30.8
BcaB03g15810 Brassica carinata HOM05D001588 ORTHO05D002975 1.6e-13 80.1 61 68.9
PGSC0003DMG400017604 Solanum tuberosum HOM05D001588 ORTHO05D002975 2.7e-13 79.3 154 35.7
unitig_899.g15214 Utricularia gibba HOM05D001588 ORTHO05D002975 2.7e-13 79.3 184 33.7
PSO063G4077 Papaver somniferum HOM05D001588 ORTHO05D002975 6.1e-13 78.2 184 31.5
CsaV3_6G040200 Cucumis sativus L. HOM05D001588 ORTHO05D002975 7.9e-13 77.8 181 32.6
Sed0011316 Sechium edule HOM05D001588 ORTHO05D002975 1.4e-12 77.0 176 31.2
Pp3c9_5670 Physcomitrium patens HOM05D001588 ORTHO05D002975 2.3e-12 76.3 183 30.6
PSO339G2017 Papaver somniferum HOM05D001588 ORTHO05D002975 3.0e-12 75.9 184 31.0
arahy.Tifrunner.gnm1.ann1.C5R797 Arachis hypogaea HOM05D001588 ORTHO05D002975 3.9e-12 75.5 102 44.1
SGA_v2.0_scaffold277G46714 Striga asiatica HOM05D001588 ORTHO05D002975 5.1e-12 75.1 169 32.0
Solyc10g083540.3 Solanum lycopersicum HOM05D001588 ORTHO05D002975 1.1e-11 73.9 184 31.5
TPR.G30344 Trifolium pratense HOM05D001588 ORTHO05D002975 1.1e-11 73.9 165 35.2
Mapoly0148s0008 Marchantia polymorpha HOM05D001588 ORTHO05D002975 1.9e-11 73.2 183 32.8
PGSC0003DMG400047128 Solanum tuberosum HOM05D001588 ORTHO05D002975 1.9e-11 73.2 184 29.9
Nitab4.5_0001979g0010 Nicotiana tabacum HOM05D001588 ORTHO05D002975 2.5e-11 72.8 154 37.0
Sopen10g033010 Solanum pennellii HOM05D001588 ORTHO05D002975 2.5e-11 72.8 184 31.0
SMO367G0954 Selaginella moellendorffii HOM05D001588 ORTHO05D002975 5.7e-11 71.6 181 31.5
Oeu040559.1 Olea europaea HOM05D001588 ORTHO05D002975 7.4e-11 71.2 98 44.9
ClCG04G009590 Citrullus lanatus HOM05D001588 ORTHO05D002975 9.7e-11 70.9 134 36.6
CAN.G1138.23 Capsicum annuum HOM05D001588 ORTHO05D002975 2.2e-10 69.7 184 29.3
Nitab4.5_0006709g0060 Nicotiana tabacum HOM05D001588 ORTHO05D002975 3.7e-10 68.9 136 35.3
Aqoxy2G01530 Aquilegia oxysepala HOM05D001588 ORTHO05D002975 8.2e-10 67.8 172 33.7
CBR_g10916 Chara braunii HOM05D001588 ORTHO05D002975 1.1e-09 67.4 182 28.6
Atru.chr3.3418 Acer truncatum HOM05D001588 ORTHO05D002975 3.1e-09 65.9 180 27.8
MD11G1153900 Malus domestica HOM05D001588 ORTHO05D002975 4.1e-09 65.5 185 28.1
AagrBONN_evm.TU.Sc2ySwM_344.3339 Anthoceros agrestis HOM05D001588 ORTHO05D002975 6.9e-09 64.7 184 28.3
arahy.Tifrunner.gnm1.ann1.I2K1QZ Arachis hypogaea HOM05D001588 ORTHO05D002975 1.5e-08 63.5 89 44.9
RcHm_v2.0_Chr5g0055901 Rosa chinensis HOM05D001588 ORTHO05D002975 2.0e-08 63.2 184 27.7
DCAR_020796 Daucus carota HOM05D001588 ORTHO05D002975 4.5e-08 62.0 107 34.6
Nn6g35129 Nelumbo nucifera HOM05D001588 ORTHO05D002975 5.9e-08 61.6 132 33.3
MELO3C033157.2 Cucumis melo HOM05D001588 ORTHO05D002975 1.3e-07 60.5 93 39.8
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 6.5e-07 58.2 132 31.8
ClCG04G009600 Citrullus lanatus HOM05D001588 ORTHO05D002975 8.5e-07 57.8 165 27.3
PGSC0003DMG400012987 Solanum tuberosum HOM05D001588 ORTHO05D002975 8.5e-07 57.8 181 27.6
Nitab4.5_0010518g0020 Nicotiana tabacum HOM05D001588 ORTHO05D002975 3.2e-06 55.8 151 31.8
Sed0013024 Sechium edule HOM05D001588 ORTHO05D002975 3.2e-06 55.8 131 35.9
Sed0024800 Sechium edule HOM05D001588 ORTHO05D002975 3.2e-06 55.8 174 26.4
CsaV3_6G040210 Cucumis sativus L. HOM05D001588 ORTHO05D002975 5.5e-06 55.1 181 24.9
SEGI_35712 Sequoiadendron giganteum HOM05D001588 ORTHO05D002975 5.5e-06 55.1 135 34.8
Solyc10g086160.1 Solanum lycopersicum HOM05D001588 ORTHO05D002975 7.2e-06 54.7 154 29.9


User provided reference genes

Program Settings