Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 1.9e-287 991.9 523 100.0
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 4.8e-283 977.2 550 95.1
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 5.4e-250 867.5 558 85.5
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 3.3e-231 805.1 557 78.3
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 9.3e-186 654.1 564 65.8
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 2.1e-185 652.9 565 67.4
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 4.6e-185 651.7 565 67.3
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 6.7e-184 647.9 564 66.3
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.5e-183 646.7 565 66.7
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 3.8e-179 632.1 564 63.5
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 2.5e-178 629.4 565 65.5
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 2.5e-178 629.4 565 65.5
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 9.3e-178 627.5 559 62.8
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.3e-176 623.6 564 61.3
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 3.7e-174 615.5 537 64.4
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 5.0e-171 605.1 565 60.2
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-170 603.2 558 63.3
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 2.7e-169 599.4 560 60.7
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 2.7e-148 529.6 551 54.3
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.2e-113 414.5 569 44.1
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.1e-112 411.4 568 45.4
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.1e-109 399.4 570 43.9
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 2.1e-108 397.1 569 42.4
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.1e-106 391.3 568 42.4
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.1e-106 391.3 567 41.6
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.2e-105 387.9 547 43.5
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.1e-104 384.8 567 41.4
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.4e-104 384.4 531 43.5
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 5.8e-103 379.0 583 41.3
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 7.6e-103 378.6 563 41.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.3e-102 377.9 531 43.7
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.4e-102 375.6 534 43.1
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.4e-101 374.4 570 41.1
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 3.2e-101 373.2 568 42.4
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.7e-100 370.2 534 41.6
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.7e-100 370.2 534 41.6
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.6e-100 369.4 568 41.4
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 6.0e-100 369.0 568 39.4
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 5.6e-98 362.5 570 41.4
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.1e-96 358.2 531 41.8
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.4e-96 357.8 554 39.5
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.4e-96 357.8 564 37.9
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.1e-96 356.7 532 39.5
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 2.0e-95 354.0 586 38.6
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.7e-94 350.9 566 39.6
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.2e-94 350.5 573 39.1
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.8e-94 349.7 557 39.9
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 8.4e-94 348.6 531 40.9
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.4e-93 347.8 568 39.3
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.4e-93 347.8 549 39.2
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.4e-93 347.8 569 39.0
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 4.2e-93 346.3 633 37.3
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 5.4e-93 345.9 563 39.8
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 7.1e-93 345.5 557 39.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.3e-91 341.3 557 39.3
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.3e-91 341.3 534 40.6
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.7e-91 340.9 535 38.3
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 3.9e-91 339.7 531 39.5
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.3e-89 334.7 570 38.8
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 2.1e-89 334.0 545 37.1
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 2.1e-89 334.0 572 37.6
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 6.2e-89 332.4 533 37.9
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.1e-88 331.6 534 39.9
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.1e-88 331.6 534 39.7
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.8e-88 330.9 547 38.9
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.1e-88 330.1 564 37.9
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.2e-87 328.2 547 38.6
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.6e-87 327.0 535 38.7
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.4e-87 326.6 545 38.5
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 9.9e-87 325.1 545 38.5
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.7e-86 324.3 538 40.9
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.4e-85 321.2 542 36.2
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.9e-85 320.9 567 36.0
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 4.2e-85 319.7 566 37.3
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 4.2e-85 319.7 539 35.8
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.2e-84 318.2 386 46.9
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 2.1e-84 317.4 573 36.8
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 4.6e-84 316.2 535 38.1
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 4.6e-84 316.2 565 37.0
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 4.6e-84 316.2 535 37.4
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-83 314.3 573 35.6
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.8e-83 314.3 545 36.7
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 2.3e-83 313.9 574 35.2
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.3e-82 309.7 567 35.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-81 308.1 573 35.4
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 3.7e-81 306.6 511 36.8
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.1e-80 303.5 567 35.4
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.6e-79 300.4 579 35.8
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.4e-79 300.1 557 37.3
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 5.8e-79 299.3 579 35.2
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.9e-78 297.0 538 36.4
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 4.9e-78 296.2 579 33.3
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.9e-77 294.3 537 35.4
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 6.0e-76 289.3 164 92.1
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 6.7e-75 285.8 536 37.1
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.5e-74 284.6 458 38.2
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.5e-74 284.6 357 44.3
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 3.7e-73 280.0 533 35.8
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 8.2e-73 278.9 584 33.7
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 5.3e-72 276.2 563 34.3
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 5.8e-71 272.7 456 38.4
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.0e-70 271.9 550 34.2
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.3e-70 271.6 568 33.3
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.4e-69 268.1 572 33.0
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 3.2e-69 266.9 569 32.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 9.3e-69 265.4 535 33.1
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.9e-68 262.3 537 33.0
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.0e-67 261.9 535 34.0
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 2.3e-67 260.8 439 37.4
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.0e-67 260.4 472 36.7
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 8.7e-67 258.8 499 34.3
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.9e-66 257.7 564 32.8
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 9.7e-66 255.4 546 32.6
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 2.8e-65 253.8 400 39.8
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.8e-65 253.8 534 33.0
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 3.7e-65 253.4 534 33.1
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 8.2e-65 252.3 542 31.7
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.1e-64 251.9 446 36.8
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 4.1e-64 250.0 571 31.9
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.7e-63 245.7 596 32.2
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 7.7e-63 245.7 530 33.8
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.0e-62 245.4 258 48.1
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 2.9e-62 243.8 423 39.0
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.4e-56 224.2 378 39.9
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 9.1e-56 222.2 461 33.2
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.2e-55 221.9 250 45.2
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.0e-43 182.2 524 30.0
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 4.4e-42 176.8 410 29.3
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.8e-41 173.3 245 38.4
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.0e-39 167.9 320 34.7
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.0e-38 165.6 585 26.3
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.5e-37 161.0 425 30.6
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.5e-34 151.8 246 35.4
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 4.4e-26 123.6 338 29.6
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.4e-26 123.6 216 38.4
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.1e-24 119.0 374 26.5
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.1e-24 117.5 147 44.9
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.4e-24 116.7 147 44.2
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 5.9e-23 113.2 173 38.2
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 1.7e-22 111.7 568 23.4
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.9e-22 110.9 164 39.6
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.1e-21 109.0 130 43.8
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.2e-17 94.7 95 56.8
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.7e-17 94.0 254 33.9
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 3.7e-17 94.0 433 22.9
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-16 92.4 134 38.1
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 7.0e-16 89.7 74 59.5
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 4.5e-15 87.0 123 43.1
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 2.9e-14 84.3 530 22.8
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.6e-14 82.8 110 41.8
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.3e-13 80.5 101 41.6
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 7.3e-13 79.7 175 29.1
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.6e-12 78.6 116 44.8
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 3.6e-12 77.4 160 30.0
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.6e-12 77.4 93 44.1
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 8.9e-11 72.8 124 31.5
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 2.2e-09 68.2 63 54.0
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.9e-09 67.8 130 29.2
A07p22200 Brassica napus HOM05D003578 ORTHO05D004021 1.4e-08 65.5 38 97.4
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 4.1e-08 63.9 431 20.6
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 9.2e-08 62.8 67 44.8
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.6e-07 62.0 295 26.8
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.0e-07 61.6 97 40.2
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.7e-07 61.2 63 49.2
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 7.8e-07 59.7 112 33.9
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 1.0e-06 59.3 126 31.7


User provided reference genes

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