Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44658 Brassica carinata HOM05D001128 ORTHO05D000721 3.9e-158 561.6 326 100.0
C06p21800 Brassica napus HOM05D001128 ORTHO05D000721 3.9e-158 561.6 326 100.0
BolC6t37368H Brassica oleracea HOM05D001128 ORTHO05D000721 6.7e-150 534.3 326 96.6
BraA07t29871Z Brassica rapa HOM05D001128 ORTHO05D000721 3.3e-112 409.1 332 72.3
A07p21900 Brassica napus HOM05D001128 ORTHO05D000721 7.5e-109 397.9 332 71.1
BcaB02g07755 Brassica carinata HOM05D001128 ORTHO05D000721 3.9e-105 385.6 327 66.7
Sp5g08400 Schrenkiella parvula HOM05D001128 ORTHO05D000721 1.4e-86 323.9 367 57.2
A09p46920 Brassica napus HOM05D001128 ORTHO05D000721 6.9e-70 268.5 362 53.0
BcaC07g39751 Brassica carinata HOM05D001128 ORTHO05D000721 4.5e-69 265.8 367 49.9
C08p29250 Brassica napus HOM05D001128 ORTHO05D000721 4.5e-69 265.8 367 49.9
BolC8t50527H Brassica oleracea HOM05D001128 ORTHO05D000721 2.9e-68 263.1 370 50.0
BraA09t40159Z Brassica rapa HOM05D001128 ORTHO05D000721 3.2e-67 259.6 363 51.8
BcaB01g00225 Brassica carinata HOM05D001128 ORTHO05D000721 4.2e-67 259.2 361 53.2
Thhalv10010478m.g Eutrema salsugineum HOM05D001128 ORTHO05D000721 5.8e-61 238.8 390 45.9
BolC4t25433H Brassica oleracea HOM05D001128 ORTHO05D000721 3.2e-59 233.0 352 46.3
AL5G35000 Arabidopsis lyrata HOM05D001128 ORTHO05D000721 1.2e-58 231.1 363 46.0
BcaB02g08495 Brassica carinata HOM05D001128 ORTHO05D000721 2.7e-58 229.9 353 49.0
BcaC02g09109 Brassica carinata HOM05D001128 ORTHO05D000721 2.7e-58 229.9 349 45.8
C04p38580 Brassica napus HOM05D001128 ORTHO05D000721 5.1e-57 225.7 349 45.3
A04p05780 Brassica napus HOM05D001128 ORTHO05D000721 9.0e-54 214.9 356 44.7
CARHR163900 Cardamine hirsuta HOM05D001128 ORTHO05D000721 9.0e-54 214.9 384 42.2
BraA04t16274Z Brassica rapa HOM05D001128 ORTHO05D000721 3.4e-53 213.0 363 44.1
AT3G54000 Arabidopsis thaliana HOM05D001128 ORTHO05D000721 2.2e-52 210.3 358 48.9
Carub.0005s2059 Capsella rubella HOM05D001128 ORTHO05D000721 1.1e-51 208.0 378 45.2
Aa31LG10G8860 Aethionema arabicum HOM05D001128 ORTHO05D000721 1.9e-43 180.6 332 44.0
THA.LOC104823397 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 2.8e-39 166.8 345 40.0
THA.LOC104806538 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 5.5e-35 152.5 346 40.8
Manes.09G099100 Manihot esculenta HOM05D001128 ORTHO05D000721 8.5e-28 128.6 349 34.4
THA.LOC104805648 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 3.2e-27 126.7 321 36.1
Thecc.05G027900 Theobroma cacao HOM05D001128 ORTHO05D000721 4.2e-27 126.3 337 35.9
Gorai.006G178800 Gossypium raimondii HOM05D001128 ORTHO05D000721 4.7e-26 122.9 335 33.4
Gohir.D09G157200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.8e-25 120.9 403 30.8
BcaB02g07756 Brassica carinata HOM05D001128 ORTHO05D000721 3.9e-25 119.8 111 63.1
Cpa.g.sc56.66 Carica papaya HOM05D001128 ORTHO05D000721 5.2e-25 119.4 340 34.1
Gohir.A09G161600 Gossypium hirsutum HOM05D001128 ORTHO05D000721 5.7e-24 115.9 341 33.1
Duzib128G0075 Durio zibethinus HOM05D001128 ORTHO05D000721 1.1e-22 111.7 336 33.6
COL.COLO4_14683 Corchorus olitorius HOM05D001128 ORTHO05D000721 1.8e-22 110.9 346 33.5
Ciclev10011799m.g Citrus clementina HOM05D001128 ORTHO05D000721 3.1e-22 110.2 363 34.7
CANSAT35G1304 Cannabis sativa HOM05D001128 ORTHO05D000721 3.5e-21 106.7 347 31.7
Gohir.D04G126000 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.0e-20 105.1 341 32.3
Gohir.A04G086100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.2e-20 104.0 342 32.5
TAR636G2726 Trochodendron aralioides HOM05D001128 ORTHO05D000721 2.9e-20 103.6 324 30.6
TWI74G1371 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 3.8e-20 103.2 337 31.8
Gorai.012G109000 Gossypium raimondii HOM05D001128 ORTHO05D000721 5.0e-20 102.8 341 32.0
TWI77G0372 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 1.5e-19 101.3 325 32.0
Duzib093G0147 Durio zibethinus HOM05D001128 ORTHO05D000721 1.9e-19 100.9 342 33.9
CiPaw.10G150200 Carya illinoinensis HOM05D001128 ORTHO05D000721 2.3e-17 94.0 347 29.7
Rhsim05G0200600 Rhododendron simsii HOM05D001128 ORTHO05D000721 5.2e-17 92.8 353 33.1
TAR623G0478 Trochodendron aralioides HOM05D001128 ORTHO05D000721 8.8e-17 92.0 351 34.5
CSS0004370 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 1.5e-16 91.3 330 33.6
Duzib106G0325 Durio zibethinus HOM05D001128 ORTHO05D000721 1.5e-16 91.3 302 31.5
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 2.0e-16 90.9 340 33.2
Actinidia13814 Actinidia chinensis HOM05D001128 ORTHO05D000721 3.3e-16 90.1 346 31.5
PSO339G4622 Papaver somniferum HOM05D001128 ORTHO05D000721 5.7e-16 89.4 363 32.5
Cfa017294 Carpinus fangiana HOM05D001128 ORTHO05D000721 9.7e-16 88.6 355 30.4
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 1.7e-15 87.8 366 30.1
Phvul.008G113400 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 1.7e-15 87.8 332 31.6
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 3.7e-15 86.7 362 30.7
RcHm_v2.0_Chr3g0464501 Rosa chinensis HOM05D001128 ORTHO05D000721 4.8e-15 86.3 415 28.0
Ca_07581_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 6.3e-15 85.9 346 28.9
CsaV3_3G034430 Cucumis sativus L. HOM05D001128 ORTHO05D000721 6.3e-15 85.9 316 31.3
Hma1.2p1_0671F.1_g200660 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 6.3e-15 85.9 348 28.4
Psat0s1845g0240 Pisum sativum HOM05D001128 ORTHO05D000721 6.3e-15 85.9 353 28.3
VMungo1383G1773 Vigna mungo HOM05D001128 ORTHO05D000721 8.2e-15 85.5 334 30.2
Potri.006G093000 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.1e-14 85.1 363 29.5
vmacro20201 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 1.4e-14 84.7 335 31.6
Gorai.007G377500 Gossypium raimondii HOM05D001128 ORTHO05D000721 1.8e-14 84.3 299 31.4
Gohir.D11G347100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.4e-14 84.0 299 31.4
Glyma.07G141000 Glycine max HOM05D001128 ORTHO05D000721 3.1e-14 83.6 336 31.8
MD04G1140200 Malus domestica HOM05D001128 ORTHO05D000721 3.1e-14 83.6 337 30.0
SalBow1G2079 Salvia bowleyana HOM05D001128 ORTHO05D000721 3.1e-14 83.6 379 28.0
Prupe.6G265300 Prunus persica HOM05D001128 ORTHO05D000721 4.1e-14 83.2 357 29.1
ClCG10G021600 Citrullus lanatus HOM05D001128 ORTHO05D000721 5.3e-14 82.8 300 29.7
MBI14_g02856_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 5.3e-14 82.8 340 32.6
QL07p027947 Quercus lobata HOM05D001128 ORTHO05D000721 5.3e-14 82.8 352 30.4
MD12G1155400 Malus domestica HOM05D001128 ORTHO05D000721 7.0e-14 82.4 341 30.5
CsaV3_4G025740 Cucumis sativus L. HOM05D001128 ORTHO05D000721 9.1e-14 82.0 331 29.3
Atru.chr8.2106 Acer truncatum HOM05D001128 ORTHO05D000721 1.2e-13 81.6 373 31.4
Haze_20899 Corylus avellana HOM05D001128 ORTHO05D000721 1.2e-13 81.6 364 29.4
Glyma.18G191000 Glycine max HOM05D001128 ORTHO05D000721 1.2e-13 81.6 339 30.7
MELO3C009213.2 Cucumis melo HOM05D001128 ORTHO05D000721 2.0e-13 80.9 313 29.7
Actinidia29161 Actinidia chinensis HOM05D001128 ORTHO05D000721 2.7e-13 80.5 345 29.9
Aqoxy1G00786 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 3.5e-13 80.1 412 25.7
ClCG04G007510 Citrullus lanatus HOM05D001128 ORTHO05D000721 3.5e-13 80.1 334 29.0
MELO3C003199.2 Cucumis melo HOM05D001128 ORTHO05D000721 5.9e-13 79.3 330 28.8
FvH4_6g12650 Fragaria vesca HOM05D001128 ORTHO05D000721 7.7e-13 79.0 406 28.6
Oeu013161.1 Olea europaea HOM05D001128 ORTHO05D000721 2.2e-12 77.4 381 26.0
FAN14G3619 Fragaria x ananassa HOM05D001128 ORTHO05D000721 5.0e-12 76.3 408 28.2
Lsat_1_v5_gn_8_80861 Lactuca sativa HOM05D001128 ORTHO05D000721 5.0e-12 76.3 312 29.2
GSVIVG01034054001 Vitis vinifera HOM05D001128 ORTHO05D000721 6.5e-12 75.9 305 28.2
Potri.016G105000 Populus trichocarpa HOM05D001128 ORTHO05D000721 8.5e-12 75.5 360 29.2
FAN02G4298 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.5e-11 74.7 411 26.8
Lj3C959G13 Lonicera japonica HOM05D001128 ORTHO05D000721 1.5e-11 74.7 330 28.5
Nitab4.5_0000008g0230 Nicotiana tabacum HOM05D001128 ORTHO05D000721 1.5e-11 74.7 321 30.8
FAN05G2922 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.9e-11 74.3 413 27.1
CSS0030928 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 2.5e-11 73.9 335 31.0
Nitab4.5_0000119g0370 Nicotiana tabacum HOM05D001128 ORTHO05D000721 2.5e-11 73.9 329 29.5
DCAR_028803 Daucus carota HOM05D001128 ORTHO05D000721 3.2e-11 73.6 311 30.5
FAN09G1692 Fragaria x ananassa HOM05D001128 ORTHO05D000721 3.2e-11 73.6 410 26.3
Nitab4.5_0003264g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 3.2e-11 73.6 321 30.5
ClCG10G021590 Citrullus lanatus HOM05D001128 ORTHO05D000721 7.2e-11 72.4 306 28.8
Solyc09g011690.4 Solanum lycopersicum HOM05D001128 ORTHO05D000721 7.2e-11 72.4 338 29.3
Sed0002927 Sechium edule HOM05D001128 ORTHO05D000721 1.6e-10 71.2 290 28.3
Sed0025256 Sechium edule HOM05D001128 ORTHO05D000721 2.1e-10 70.9 314 28.7
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 6.1e-10 69.3 344 30.5
Oeu009915.1 Olea europaea HOM05D001128 ORTHO05D000721 6.1e-10 69.3 326 27.3
Gohir.A11G328200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 8.0e-10 68.9 308 32.8
MBI05_g02674_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 8.0e-10 68.9 310 29.7
Nn2g13535 Nelumbo nucifera HOM05D001128 ORTHO05D000721 8.0e-10 68.9 332 27.7
MSTRG.5621 Avicennia marina HOM05D001128 ORTHO05D000721 1.0e-09 68.6 326 27.0
CSS0013156 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 1.0e-09 68.6 335 30.4
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.0e-09 68.6 339 29.2
PGSC0003DMG400019191 Solanum tuberosum HOM05D001128 ORTHO05D000721 1.0e-09 68.6 303 30.0
Sopen09g006510 Solanum pennellii HOM05D001128 ORTHO05D000721 1.4e-09 68.2 335 28.7
Oeu001830.1 Olea europaea HOM05D001128 ORTHO05D000721 1.8e-09 67.8 329 25.8
Sabra16G0104100 Salix brachista HOM05D001128 ORTHO05D000721 1.8e-09 67.8 367 28.9
PGSC0003DMG400011730 Solanum tuberosum HOM05D001128 ORTHO05D000721 2.3e-09 67.4 335 27.8
CSS0047983 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 3.0e-09 67.0 342 27.5
Migut.J00260 Erythranthe guttata HOM05D001128 ORTHO05D000721 4.0e-09 66.6 374 24.6
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.0e-09 66.6 344 30.8
Dinv35538 Davidia involucrata HOM05D001128 ORTHO05D000721 5.2e-09 66.2 232 34.5
Lsat_1_v5_gn_9_31700 Lactuca sativa HOM05D001128 ORTHO05D000721 5.2e-09 66.2 353 29.2
Oeu018335.1 Olea europaea HOM05D001128 ORTHO05D000721 6.8e-09 65.9 387 26.4
HanXRQChr06g0176291 Helianthus annuus HOM05D001128 ORTHO05D000721 8.8e-09 65.5 322 32.9
ClCG00G003060 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.5e-08 64.7 318 27.4
vmacro07011 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 2.0e-08 64.3 325 27.1
Peaxi162Scf00132g00911 Petunia axillaris HOM05D001128 ORTHO05D000721 2.6e-08 63.9 317 26.8
Migut.L01977 Erythranthe guttata HOM05D001128 ORTHO05D000721 3.4e-08 63.5 356 26.1
Dinv16282 Davidia involucrata HOM05D001128 ORTHO05D000721 4.4e-08 63.2 360 27.8
C04p39540 Brassica napus HOM05D022378 ORTHO05D024169 9.8e-08 62.0 71 52.1
BolC4t21720H Brassica oleracea HOM05D022378 ORTHO05D024169 9.8e-08 62.0 71 52.1
BolC4t25519H Brassica oleracea HOM05D022378 ORTHO05D024169 9.8e-08 62.0 71 52.1
BcaC02g09005 Brassica carinata HOM05D022378 ORTHO05D024169 1.3e-07 61.6 70 52.9
BolC4t21741H Brassica oleracea HOM05D022378 ORTHO05D024169 1.3e-07 61.6 71 52.1
Duzib128G2050 Durio zibethinus HOM05D001128 ORTHO05D000721 2.8e-07 60.5 350 26.9
Gohir.A06G165300 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.8e-07 60.5 307 27.4
LjContig00047_ERROPOS266959g0024685 Lotus japonicus HOM05D001128 ORTHO05D000721 2.8e-07 60.5 311 29.9
CiPaw.09G202700 Carya illinoinensis HOM05D001128 ORTHO05D000721 4.8e-07 59.7 214 29.9
ECA236G1029 Erigeron canadensis HOM05D001128 ORTHO05D000131 4.8e-07 59.7 285 34.7
Gohir.A05G346700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.8e-07 59.7 324 25.9
Hma1.2p1_0026F.1_g016650 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 4.8e-07 59.7 432 26.4
Nitab4.5_0002823g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 4.8e-07 59.7 322 28.0
Lalb_Chr19g0124971 Lupinus albus HOM05D001128 ORTHO05D000721 6.3e-07 59.3 398 32.4
Dinv34448 Davidia involucrata HOM05D001128 ORTHO05D000721 1.1e-06 58.5 332 27.4
HPP92_015345 Vanilla planifolia HOM05D001128 ORTHO05D000721 1.1e-06 58.5 290 27.2
Gorai.012G073700 Gossypium raimondii HOM05D001128 ORTHO05D000721 1.4e-06 58.2 322 26.7
HPP92_026966 Vanilla planifolia HOM05D001128 ORTHO05D000721 1.4e-06 58.2 290 27.2
COL.COLO4_25581 Corchorus olitorius HOM05D001128 ORTHO05D000721 3.1e-06 57.0 360 25.6
Gohir.D06G170700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.1e-06 57.0 307 26.7
HPP92_018175 Vanilla planifolia HOM05D001128 ORTHO05D000721 3.1e-06 57.0 355 26.8
Cpa.g.sc19.247 Carica papaya HOM05D001128 ORTHO05D000721 4.1e-06 56.6 350 26.0
Gohir.D04G065500 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.1e-06 56.6 321 26.5
Lalb_Chr03g0042761 Lupinus albus HOM05D001128 ORTHO05D000721 7.0e-06 55.8 324 25.6
MD15G1149300 Malus domestica HOM05D001128 ORTHO05D000721 7.0e-06 55.8 172 33.1
PGR004G1424 Punica granatum HOM05D001128 ORTHO05D000721 7.0e-06 55.8 308 27.6
ATR0210G013 Amborella trichopoda HOM05D001128 ORTHO05D000721 9.1e-06 55.5 350 27.7
Hma1.2p1_1521F.1_g288670 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 9.1e-06 55.5 155 36.8
Prupe.2G243200 Prunus persica HOM05D001128 ORTHO05D000721 9.1e-06 55.5 354 25.7
RcHm_v2.0_Chr1g0368901 Rosa chinensis HOM05D001128 ORTHO05D000721 9.1e-06 55.5 341 28.7


User provided reference genes

Program Settings