Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 2.3e-173 612.1 301 100.0
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 2.3e-173 612.1 301 100.0
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.4e-172 608.2 301 99.3
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 5.6e-167 590.9 301 97.0
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 9.5e-167 590.1 301 97.0
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 5.1e-160 567.8 303 93.1
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 7.6e-140 500.7 307 83.7
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 3.3e-111 405.6 310 72.6
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 6.3e-110 401.4 310 72.9
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 7.2e-106 387.9 314 70.1
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 6.1e-105 384.8 310 69.7
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.5e-103 380.2 311 67.5
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 2.6e-100 369.4 317 65.0
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.2e-92 344.0 316 61.7
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.0e-87 326.6 304 60.9
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 8.2e-86 321.2 316 61.7
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 6.5e-83 311.6 250 67.6
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.2e-76 290.8 312 55.1
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 8.6e-75 284.6 315 55.2
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.5e-74 283.9 279 61.3
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 7.2e-74 281.6 315 54.9
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 2.8e-73 279.6 312 54.5
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 6.8e-72 275.0 284 57.7
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 8.9e-72 274.6 284 57.7
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.9e-72 274.6 308 55.5
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 2.6e-71 273.1 284 57.4
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 2.6e-71 273.1 315 54.9
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.6e-71 273.1 308 55.2
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 9.8e-71 271.2 313 53.7
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.2e-70 270.0 307 53.7
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 6.3e-70 268.5 317 53.0
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 6.3e-70 268.5 320 55.0
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 6.3e-70 268.5 307 55.0
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 8.3e-70 268.1 311 52.7
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.1e-69 267.7 316 53.8
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.8e-69 266.9 312 52.2
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.4e-69 266.5 312 56.4
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 2.4e-69 266.5 313 50.5
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 3.1e-69 266.2 321 53.0
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 7.0e-69 265.0 315 52.4
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 3.5e-68 262.7 313 53.4
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 7.8e-68 261.5 312 52.2
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 5.0e-67 258.8 326 53.1
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 6.6e-67 258.5 342 51.8
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 8.6e-67 258.1 313 54.0
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.1e-66 257.7 309 52.8
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.9e-66 256.9 342 51.5
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 3.3e-66 256.1 315 48.9
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 3.3e-66 256.1 313 51.1
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 7.3e-66 255.0 328 53.4
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 1.2e-65 254.2 314 49.4
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 8.0e-65 251.5 328 50.9
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 8.0e-65 251.5 306 51.3
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 8.0e-65 251.5 316 51.6
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 8.0e-65 251.5 316 53.8
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 1.0e-64 251.1 328 50.6
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.8e-64 250.4 318 50.6
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 2.3e-64 250.0 312 49.0
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 3.0e-64 249.6 321 53.3
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 6.8e-64 248.4 320 50.6
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 6.8e-64 248.4 328 50.9
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 8.9e-64 248.1 309 50.8
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.5e-63 247.3 329 52.3
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 2.6e-63 246.5 308 51.9
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 9.8e-63 244.6 318 53.1
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.3e-62 244.2 313 49.8
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 1.3e-62 244.2 336 49.7
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.2e-62 243.4 331 48.0
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 3.7e-62 242.7 323 49.8
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 3.7e-62 242.7 320 51.6
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 4.9e-62 242.3 313 49.2
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 4.9e-62 242.3 321 51.4
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 1.4e-61 240.7 308 46.4
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.4e-61 240.0 314 51.9
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.2e-60 237.7 309 48.9
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 2.0e-60 236.9 314 49.7
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 2.0e-60 236.9 320 48.8
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 4.6e-60 235.7 318 50.6
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 7.8e-60 235.0 317 49.8
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 1.3e-59 234.2 310 48.1
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 1.7e-59 233.8 321 50.2
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 3.0e-59 233.0 309 48.5
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 5.0e-59 232.3 315 49.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 6.6e-59 231.9 319 49.2
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 6.6e-59 231.9 317 49.2
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.1e-58 231.1 317 47.9
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 4.3e-58 229.2 311 48.6
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 9.5e-58 228.0 311 48.6
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.6e-57 227.3 311 48.2
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 4.7e-57 225.7 311 48.2
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 6.2e-57 225.3 316 49.4
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 2.3e-56 223.4 319 47.0
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 3.1e-56 223.0 293 50.2
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 2.2e-54 216.9 308 46.8
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 6.4e-54 215.3 264 52.7
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.4e-53 214.2 313 46.6
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.9e-53 213.8 313 47.0
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 3.2e-53 213.0 319 45.1
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 9.2e-53 211.5 302 47.7
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 7.8e-52 208.4 316 44.9
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.7e-51 207.2 233 52.8
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.1e-50 204.5 215 58.1
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 2.5e-50 203.4 296 47.3
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 3.3e-50 203.0 251 53.0
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 7.3e-50 201.8 325 45.2
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-49 201.1 332 45.2
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.7e-49 199.1 179 65.9
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.1e-49 198.4 327 45.0
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.4e-48 197.6 311 44.7
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 5.2e-48 195.7 311 44.4
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 8.9e-48 194.9 179 64.2
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 6.4e-46 188.7 169 65.1
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 1.9e-45 187.2 343 44.0
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 2.4e-45 186.8 311 42.4
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.6e-44 184.1 304 44.7
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 7.8e-44 181.8 302 41.7
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 2.3e-43 180.3 302 42.7
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 3.3e-42 176.4 397 35.3
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 1.6e-41 174.1 305 40.7
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 2.8e-41 173.3 308 40.3
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 2.4e-40 170.2 305 41.3
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 5.8e-39 165.6 287 42.5
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 9.2e-37 158.3 305 40.0
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 6.6e-35 152.1 280 42.5
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.9e-34 150.6 146 57.5
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 4.7e-33 146.0 364 36.0
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 8.1e-33 145.2 226 45.1
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 2.0e-31 140.6 196 45.9
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 4.4e-31 139.4 102 72.5
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 3.8e-30 136.3 288 39.9
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.6e-28 131.0 175 44.0
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.1e-25 120.6 118 57.6
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.1e-25 120.6 141 52.5
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 8.1e-25 118.6 202 41.6
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 8.1e-25 118.6 151 45.7
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 1.8e-24 117.5 177 41.8
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 3.1e-24 116.7 177 41.8
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 4.5e-23 112.8 151 46.4
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.7e-22 110.9 70 72.9
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 3.8e-22 109.8 161 51.6
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 2.4e-21 107.1 117 53.0
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 7.1e-21 105.5 158 41.8
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 3.5e-20 103.2 104 54.8
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 7.9e-20 102.1 159 40.9
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 3.7e-17 93.2 150 41.3
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 3.1e-16 90.1 108 56.5
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 4.0e-16 89.7 68 69.1
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 4.0e-16 89.7 68 69.1
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 1.5e-15 87.8 68 67.6
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 4.5e-15 86.3 108 54.6
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 8.4e-14 82.0 168 40.5
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 8.4e-14 82.0 233 31.8
BolC4t25439H Brassica oleracea HOM05D038158 ORTHO05D042869 5.5e-13 79.3 65 70.8
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 4.8e-09 66.2 56 57.1
C04p38620 Brassica napus HOM05D038158 ORTHO05D042869 6.2e-09 65.9 71 60.6
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 1.8e-08 64.3 57 68.4
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 5.3e-08 62.8 180 30.0
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.6e-07 60.5 103 47.6
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.2e-06 57.4 85 48.2
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 3.8e-06 56.6 55 52.7
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 4.9e-06 56.2 60 53.3


User provided reference genes

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