Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 7.4e-308 1059.7 525 100.0
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 1.9e-295 1018.5 525 95.6
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 1.0e-293 1012.7 503 99.8
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 1.5e-287 992.3 527 93.2
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.8e-261 905.6 464 97.6
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 4.3e-223 778.1 386 99.7
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 5.0e-187 658.3 512 66.8
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 9.1e-181 637.5 509 65.2
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 1.2e-180 637.1 509 63.7
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 2.6e-180 636.0 509 64.4
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 1.6e-177 626.7 510 63.9
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 6.7e-176 621.3 516 64.0
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 6.7e-176 621.3 505 65.1
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 9.7e-175 617.5 511 64.0
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 6.3e-174 614.8 508 62.0
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 3.1e-173 612.5 513 62.6
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 5.3e-173 611.7 512 62.3
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 2.9e-171 605.9 505 62.0
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 3.8e-171 605.5 513 61.2
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.7e-169 598.6 514 62.3
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.5e-167 593.6 454 68.7
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 2.6e-167 592.8 513 61.0
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-164 583.6 510 61.4
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-164 583.6 510 61.4
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 1.3e-163 580.5 513 60.0
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.2e-163 579.7 516 60.7
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.9e-163 579.3 516 60.9
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.5e-163 577.8 516 60.7
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.4e-162 574.3 514 60.5
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 6.8e-160 568.2 512 59.6
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 9.1e-157 557.8 512 58.2
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 1.6e-156 557.0 512 59.2
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 2.9e-155 552.7 437 65.7
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.8e-155 552.4 514 58.9
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.2e-154 549.3 514 58.6
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 7.2e-154 548.1 511 58.9
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 9.4e-154 547.7 513 58.5
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.8e-152 543.5 514 58.4
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.0e-152 542.7 424 67.2
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 1.2e-148 530.8 507 56.6
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.6e-143 513.1 516 56.2
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.7e-142 509.2 513 55.8
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.7e-142 509.2 513 55.8
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.7e-142 509.2 513 55.8
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.7e-142 509.2 513 55.8
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.7e-142 509.2 513 55.8
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 5.4e-141 505.4 424 62.7
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 6.6e-139 498.4 444 59.7
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.2e-137 494.2 512 52.1
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 6.4e-134 481.9 510 53.9
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.4e-134 481.9 407 62.4
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-132 477.2 511 54.2
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 6.6e-123 445.3 482 52.9
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 7.6e-119 431.8 517 49.1
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 2.9e-118 429.9 338 63.9
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 6.4e-118 428.7 213 99.5
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 6.4e-118 428.7 213 99.5
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 6.4e-118 428.7 213 99.5
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 6.4e-118 428.7 213 99.5
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 6.4e-118 428.7 213 99.5
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.1e-117 427.9 507 50.9
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 5.8e-111 405.6 211 94.3
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.8e-108 395.2 444 50.7
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 2.0e-103 380.6 455 48.1
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 3.4e-103 379.8 525 45.9
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.1e-101 374.8 347 59.1
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.7e-99 365.2 289 66.1
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.5e-98 363.6 441 50.1
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 2.1e-89 334.0 394 49.7
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.5e-87 327.8 299 58.9
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 1.9e-85 320.9 330 53.6
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 3.9e-83 313.2 233 65.7
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.7e-83 312.4 510 40.6
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 1.6e-76 291.2 308 52.9
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.0e-75 288.5 265 55.1
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 1.0e-75 288.5 265 55.1
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 1.1e-69 268.5 137 98.5
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 7.9e-68 262.3 318 48.7
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 1.0e-67 261.9 279 54.5
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.4e-64 250.8 525 37.0
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.1e-61 241.9 520 34.8
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 5.5e-61 239.6 120 99.2
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 6.1e-60 236.1 181 66.9
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 3.9e-59 233.4 170 68.2
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.0e-58 231.1 267 50.9
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 2.5e-53 214.2 159 66.7
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 1.0e-51 208.8 319 41.7
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.8e-51 208.0 302 46.4
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 3.0e-51 207.2 144 68.8
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 1.4e-48 198.4 159 62.3
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 7.0e-48 196.1 195 56.4
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 2.7e-47 194.1 144 65.3
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.5e-45 186.4 169 61.5
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.1e-44 183.0 151 62.3
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 1.5e-42 178.3 122 72.1
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 2.6e-42 177.6 466 31.3
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.2e-41 174.5 130 70.0
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 2.2e-41 174.5 136 61.0
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 3.1e-40 170.6 143 61.5
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.2e-39 168.7 129 70.5
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 2.8e-36 157.5 126 63.5
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 1.0e-35 155.6 172 51.7
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.4e-35 155.2 117 69.2
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 1.5e-34 151.8 162 53.1
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.7e-33 148.3 103 70.9
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.7e-30 138.3 191 45.5
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.9e-29 134.8 118 58.5
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 5.6e-29 133.3 139 56.1
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 8.0e-28 129.4 178 45.5
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 1.0e-27 129.0 114 56.1
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 6.8e-27 126.3 134 53.7
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.0e-26 124.8 85 71.8
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.9e-25 120.9 82 70.7
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 4.9e-25 120.2 82 70.7
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.3e-25 119.4 80 72.5
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 4.1e-24 117.1 119 56.3
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 5.4e-24 116.7 121 50.4
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 5.4e-24 116.7 85 67.1
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 7.0e-24 116.3 105 55.2
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 9.2e-24 115.9 109 58.7
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.6e-23 115.2 110 58.2
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 2.7e-23 114.4 115 55.7
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 1.1e-19 102.4 392 27.6
BolSC29t60444H Brassica oleracea HOM05D004473 ORTHO05D005652 1.8e-19 101.7 48 97.9
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 1.8e-19 101.7 50 94.0
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 4.4e-18 97.1 100 52.0
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.4e-18 97.1 164 40.9
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 3.7e-17 94.0 115 43.5
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 1.9e-16 91.7 73 58.9
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.2e-16 90.9 66 68.2
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-15 88.6 81 54.3
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 7.8e-15 86.3 53 83.0
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 3.9e-14 84.0 68 66.2
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 1.5e-13 82.0 81 58.0
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.5e-13 81.3 51 68.6
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 4.3e-13 80.5 69 59.4
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 1.4e-11 75.5 70 58.6
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 6.8e-11 73.2 86 46.5
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 1.2e-10 72.4 59 57.6
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 4.4e-10 70.5 84 47.6
Gorai.006G008300 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.7e-09 67.4 95 43.2
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 3.7e-09 67.4 62 51.6
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 8.3e-09 66.2 61 54.1
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 8.3e-09 66.2 61 54.1
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 2.4e-08 64.7 78 48.7
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 3.2e-08 64.3 52 67.3
Aa31sc304G20 Aethionema arabicum HOM05D004473 ORTHO05D005652 1.0e-06 59.3 114 39.5
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 1.0e-06 59.3 58 53.4
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 1.0e-06 59.3 42 76.2
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 3.9e-06 57.4 42 57.1
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 5.1e-06 57.0 48 58.3


User provided reference genes

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