Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44599 Brassica carinata HOM05D000237 ORTHO05D024009 4.7e-35 150.6 73 100.0
C06p20710 Brassica napus HOM05D000237 ORTHO05D024009 4.7e-35 150.6 73 100.0
BolC6t37254H Brassica oleracea HOM05D000237 ORTHO05D024009 4.7e-35 150.6 73 100.0
BcaC04g18831 Brassica carinata HOM05D000237 ORTHO05D024009 8.8e-34 146.4 73 97.3
A02p00520 Brassica napus HOM05D000237 ORTHO05D000535 4.1e-15 84.3 76 64.5
BraA02t05036Z Brassica rapa HOM05D000237 ORTHO05D000535 4.1e-15 84.3 76 64.5
Sp6g32910 Schrenkiella parvula HOM05D000237 ORTHO05D000535 1.2e-14 82.8 76 64.5
Thhalv10013425m.g Eutrema salsugineum HOM05D000237 ORTHO05D000535 2.7e-14 81.6 76 64.5
C09p66740 Brassica napus HOM05D000237 ORTHO05D000535 3.5e-14 81.3 78 65.4
BolC9t59455H Brassica oleracea HOM05D000237 ORTHO05D000535 3.5e-14 81.3 78 65.4
CARHR202770 Cardamine hirsuta HOM05D000237 ORTHO05D000535 1.3e-13 79.3 76 61.8
A10p27050 Brassica napus HOM05D000237 ORTHO05D000535 1.7e-13 79.0 78 62.8
BolC2t06411H Brassica oleracea HOM05D000237 ORTHO05D000535 1.7e-13 79.0 76 61.8
BraA10t44757Z Brassica rapa HOM05D000237 ORTHO05D000535 1.7e-13 79.0 78 62.8
BcaB08g37090 Brassica carinata HOM05D000237 ORTHO05D000535 2.3e-13 78.6 77 63.6
Carub.0006s0900 Capsella rubella HOM05D000237 ORTHO05D000535 2.3e-13 78.6 76 61.8
AL6G21040 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 6.6e-13 77.0 76 63.2
BcaC03g13315 Brassica carinata HOM05D000237 ORTHO05D000535 8.6e-13 76.6 76 60.5
C02p04510 Brassica napus HOM05D000237 ORTHO05D000535 8.6e-13 76.6 76 60.5
AT5G10520 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 3.3e-12 74.7 76 60.5
Aa31LG1G16480 Aethionema arabicum HOM05D000237 ORTHO05D000535 7.3e-12 73.6 76 56.6
CARHR279510 Cardamine hirsuta HOM05D000237 ORTHO05D000535 7.3e-12 73.6 76 56.6
Sp2g28630 Schrenkiella parvula HOM05D000237 ORTHO05D000535 9.5e-12 73.2 76 56.6
Carub.0008s2639 Capsella rubella HOM05D000237 ORTHO05D000535 2.8e-11 71.6 72 58.3
BcaB05g21487 Brassica carinata HOM05D000237 ORTHO05D000535 3.1e-10 68.2 76 56.6
BcaC03g18342 Brassica carinata HOM05D000237 ORTHO05D000535 9.8e-09 63.2 76 53.9
Duzib187G1094 Durio zibethinus HOM05D000237 ORTHO05D000535 9.8e-09 63.2 67 53.7
Thecc.01G089200 Theobroma cacao HOM05D000237 ORTHO05D000535 9.8e-09 63.2 76 48.7
Aa31LG3G16630 Aethionema arabicum HOM05D000237 ORTHO05D000535 2.2e-08 62.0 76 52.6
COL.COLO4_27368 Corchorus olitorius HOM05D000237 ORTHO05D000535 2.2e-08 62.0 76 48.7
AL8G43120 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 2.9e-08 61.6 75 52.0
AT5G65530 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 2.9e-08 61.6 75 52.0
C02p64220 Brassica napus HOM05D000237 ORTHO05D000535 2.9e-08 61.6 74 52.7
BolC2t12485H Brassica oleracea HOM05D000237 ORTHO05D000535 2.9e-08 61.6 74 52.7
BraA02t09323Z Brassica rapa HOM05D000237 ORTHO05D000535 2.9e-08 61.6 74 52.7
A02p43990 Brassica napus HOM05D000237 ORTHO05D000535 4.9e-08 60.8 74 52.7
BcaNung06931 Brassica carinata HOM05D000237 ORTHO05D000535 6.4e-08 60.5 76 48.7
Cpa.g.sc55.14 Carica papaya HOM05D000237 ORTHO05D000535 6.4e-08 60.5 72 51.4
Duzib147G1415 Durio zibethinus HOM05D000237 ORTHO05D000535 8.3e-08 60.1 76 50.0
BcaC01g02785 Brassica carinata HOM05D000237 ORTHO05D000535 1.4e-07 59.3 78 48.7
A06p32380 Brassica napus HOM05D000237 ORTHO05D000535 1.4e-07 59.3 75 50.7
C03p60450 Brassica napus HOM05D000237 ORTHO05D000535 1.4e-07 59.3 78 48.7
BolC3t18306H Brassica oleracea HOM05D000237 ORTHO05D000535 1.4e-07 59.3 78 48.7
Eucgr.I00565 Eucalyptus grandis HOM05D000237 ORTHO05D000535 1.4e-07 59.3 76 43.4
TWI53G0844 Tripterygium wilfordii HOM05D000237 ORTHO05D000535 1.4e-07 59.3 76 46.1
TAR628G1011 Trochodendron aralioides HOM05D000237 ORTHO05D000535 1.4e-07 59.3 76 46.1
BraA06t26163Z Brassica rapa HOM05D000237 ORTHO05D000535 3.2e-07 58.2 75 48.0
Ciclev10025570m.g Citrus clementina HOM05D000237 ORTHO05D000535 3.2e-07 58.2 75 45.3
Gohir.A12G084700 Gossypium hirsutum HOM05D000237 ORTHO05D000535 3.2e-07 58.2 76 44.7
Gorai.008G092900 Gossypium raimondii HOM05D000237 ORTHO05D000535 4.1e-07 57.8 76 44.7
VMungo0251G2664 Vigna mungo HOM05D000237 ORTHO05D000535 7.0e-07 57.0 76 43.4
CiPaw.07G046400 Carya illinoinensis HOM05D000237 ORTHO05D000535 9.2e-07 56.6 76 43.4
CAN.G1344.23 Capsicum annuum HOM05D000237 ORTHO05D000535 1.2e-06 56.2 76 42.1
ClCG10G007810 Citrullus lanatus HOM05D000237 ORTHO05D000535 1.6e-06 55.8 79 43.0
Lalb_Chr16g0381601 Lupinus albus HOM05D000237 ORTHO05D000535 1.6e-06 55.8 75 42.7
Nitab4.5_0003930g0010 Nicotiana tabacum HOM05D000237 ORTHO05D000535 1.6e-06 55.8 76 42.1
Nitab4.5_0010932g0020 Nicotiana tabacum HOM05D000237 ORTHO05D000535 1.6e-06 55.8 76 42.1
arahy.Tifrunner.gnm1.ann1.4I9AI1 Arachis hypogaea HOM05D000237 ORTHO05D000535 2.0e-06 55.5 76 42.1
arahy.Tifrunner.gnm1.ann1.BLG1SA Arachis hypogaea HOM05D000237 ORTHO05D000535 2.0e-06 55.5 76 42.1
Eucgr.H04720 Eucalyptus grandis HOM05D000237 ORTHO05D000535 2.0e-06 55.5 76 44.7
Glyma.08G278700 Glycine max HOM05D000237 ORTHO05D000535 2.0e-06 55.5 76 43.4
Glyma.18G148100 Glycine max HOM05D000237 ORTHO05D000535 2.0e-06 55.5 76 43.4
MD01G1040800 Malus domestica HOM05D000237 ORTHO05D000535 2.0e-06 55.5 77 45.5
MELO3C014969.2 Cucumis melo HOM05D000237 ORTHO05D000535 2.7e-06 55.1 79 43.0
Lsat_1_v5_gn_2_70180 Lactuca sativa HOM05D000237 ORTHO05D000535 2.7e-06 55.1 76 40.8
Ca_22693_v3 Cicer arietinum L. HOM05D000237 ORTHO05D000535 3.5e-06 54.7 76 43.4
Migut.H02286 Erythranthe guttata HOM05D000237 ORTHO05D000535 3.5e-06 54.7 76 42.1
QL06p035923 Quercus lobata HOM05D000237 ORTHO05D000535 3.5e-06 54.7 76 43.4
Sabra07G0009100 Salix brachista HOM05D000237 ORTHO05D000535 3.5e-06 54.7 76 43.4
Haze_03886 Corylus avellana HOM05D000237 ORTHO05D000535 4.6e-06 54.3 78 44.9
Dinv13590 Davidia involucrata HOM05D000237 ORTHO05D000535 4.6e-06 54.3 76 43.4
Phvul.003G288300 Phaseolus vulgaris HOM05D000237 ORTHO05D000535 4.6e-06 54.3 76 43.4
MSTRG.23383 Avicennia marina HOM05D000237 ORTHO05D000535 6.0e-06 53.9 76 40.8
Solyc11g010730.3 Solanum lycopersicum HOM05D000237 ORTHO05D000535 6.0e-06 53.9 76 42.1
Sopen11g005540 Solanum pennellii HOM05D000237 ORTHO05D000535 6.0e-06 53.9 76 42.1
PGSC0003DMG400016126 Solanum tuberosum HOM05D000237 ORTHO05D000535 6.0e-06 53.9 76 42.1
Atru.chr3.1233 Acer truncatum HOM05D000237 ORTHO05D000535 7.8e-06 53.5 76 43.4
CANSAT01G1388 Cannabis sativa HOM05D000237 ORTHO05D000535 7.8e-06 53.5 78 44.9
CsaV3_3G006920 Cucumis sativus L. HOM05D000237 ORTHO05D000535 7.8e-06 53.5 79 43.0
Manes.12G125400 Manihot esculenta HOM05D000237 ORTHO05D000535 7.8e-06 53.5 76 42.1


User provided reference genes

Program Settings