Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 2.0e-118 429.1 215 100.0
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 5.4e-71 271.6 172 83.7
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.6e-62 243.4 182 74.7
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.6e-62 243.4 182 74.7
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.6e-62 243.4 182 74.7
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 2.9e-61 239.2 182 72.5
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 8.6e-61 237.7 182 72.5
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.9e-60 236.5 177 74.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.9e-60 236.5 177 74.0
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.9e-60 236.5 177 74.0
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 1.9e-60 236.5 182 72.0
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 9.5e-60 234.2 182 71.4
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.2e-59 233.8 182 72.0
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 4.7e-59 231.9 182 72.0
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 5.0e-53 211.8 182 67.0
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.6e-51 206.8 182 63.2
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.9e-47 193.4 178 59.0
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 2.4e-47 193.0 182 58.2
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 2.4e-47 193.0 190 56.8
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.2e-47 192.6 182 58.8
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 5.4e-47 191.8 182 58.2
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 5.4e-47 191.8 182 58.8
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 9.2e-47 191.0 182 58.8
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 9.2e-47 191.0 182 57.1
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 9.2e-47 191.0 182 57.7
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 1.2e-46 190.7 181 56.9
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.2e-46 190.7 182 57.1
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.2e-46 190.7 182 58.8
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 2.0e-46 189.9 182 59.3
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 2.0e-46 189.9 182 59.3
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.0e-46 189.9 182 58.8
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 3.5e-46 189.1 181 57.5
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 4.6e-46 188.7 180 59.4
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 6.0e-46 188.3 179 57.0
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 7.8e-46 188.0 181 56.4
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 7.8e-46 188.0 179 57.0
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.8e-46 188.0 182 57.7
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.8e-46 188.0 182 57.7
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 7.8e-46 188.0 177 57.1
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 7.8e-46 188.0 180 57.8
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.0e-45 187.6 172 58.1
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.3e-45 187.2 179 59.2
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.3e-45 187.2 180 57.2
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 1.3e-45 187.2 182 57.7
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 1.7e-45 186.8 182 58.2
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.7e-45 186.8 181 56.4
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.3e-45 186.4 181 56.4
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.0e-45 186.0 178 60.7
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 3.0e-45 186.0 183 58.5
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 3.0e-45 186.0 182 58.8
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 5.0e-45 185.3 173 58.4
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 5.0e-45 185.3 178 56.2
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 6.6e-45 184.9 181 56.4
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 6.6e-45 184.9 181 57.5
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 6.6e-45 184.9 180 58.3
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 8.6e-45 184.5 182 54.4
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 8.6e-45 184.5 181 56.4
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 8.6e-45 184.5 182 57.7
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 8.6e-45 184.5 183 56.8
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 8.6e-45 184.5 181 58.0
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.1e-44 184.1 181 57.5
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-44 184.1 182 57.1
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.1e-44 184.1 182 57.1
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.5e-44 183.7 175 57.7
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.9e-44 183.3 179 57.0
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 2.5e-44 183.0 181 58.6
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 2.5e-44 183.0 182 57.1
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.5e-44 183.0 174 56.9
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 3.3e-44 182.6 183 57.4
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 3.3e-44 182.6 180 58.3
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 4.3e-44 182.2 180 57.8
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 5.6e-44 181.8 181 56.4
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 5.6e-44 181.8 182 56.6
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 5.6e-44 181.8 179 57.5
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 7.3e-44 181.4 181 56.4
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 9.5e-44 181.0 181 56.4
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.2e-43 180.6 175 57.7
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-43 180.3 182 56.6
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 1.6e-43 180.3 181 57.5
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.6e-43 180.3 181 56.4
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 2.1e-43 179.9 174 56.3
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.1e-43 179.9 186 57.0
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.1e-43 179.9 174 56.9
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.2e-43 178.3 175 57.1
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 8.1e-43 177.9 175 57.1
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.1e-43 177.9 182 56.0
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.1e-42 177.6 183 55.2
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.4e-42 177.2 175 57.7
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.4e-42 177.2 182 54.9
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.8e-42 176.8 182 57.1
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 2.3e-42 176.4 175 57.1
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.1e-42 176.0 177 54.8
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 4.0e-42 175.6 176 54.5
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 5.2e-42 175.3 179 55.9
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 6.8e-42 174.9 178 59.0
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.2e-41 174.1 182 52.7
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 1.5e-41 173.7 86 98.8
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 1.5e-41 173.7 195 52.8
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 2.0e-41 173.3 166 58.4
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 5.8e-41 171.8 172 54.1
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 4.9e-40 168.7 178 53.4
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 6.4e-40 168.3 227 48.0
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.1e-39 167.5 173 53.8
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.4e-39 167.2 162 58.0
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.4e-39 166.4 157 56.7
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 3.2e-39 166.0 178 51.1
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.1e-39 164.9 163 56.4
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 9.2e-39 164.5 171 52.0
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-38 164.1 182 53.8
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 2.7e-38 162.9 142 59.2
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.8e-38 161.4 182 53.3
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.3e-37 159.8 199 49.2
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 3.9e-37 159.1 168 53.6
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 1.5e-36 157.1 248 41.1
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 2.5e-36 156.4 217 47.9
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 7.3e-36 154.8 153 57.5
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 6.8e-34 148.3 155 52.3
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 5.8e-33 145.2 188 46.3
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.7e-32 143.7 179 49.2
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.2e-31 139.4 153 53.6
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 4.1e-31 139.0 189 47.6
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 1.6e-30 137.1 172 47.7
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 3.5e-30 136.0 143 52.4
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.6e-29 131.7 169 47.3
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.2e-27 127.5 196 40.8
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.1e-26 122.9 142 51.4
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-25 120.9 142 50.0
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 2.0e-25 120.2 129 49.6
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.4e-25 119.4 141 48.9
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 4.4e-25 119.0 129 50.4
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.3e-21 106.7 90 61.1
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 2.1e-19 100.1 232 31.0
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-18 97.8 73 64.4
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.4e-18 96.7 129 47.3
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.3e-18 95.5 155 41.3
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 9.9e-17 91.3 62 72.6
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 2.2e-16 90.1 62 72.6
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.8e-16 89.4 68 63.2
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 8.4e-16 88.2 161 34.2
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.4e-15 87.4 72 63.9
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 1.9e-15 87.0 61 68.9
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.6e-14 84.0 154 40.3
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.5e-12 77.4 50 76.0
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-10 70.1 148 37.2
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 3.8e-08 62.8 42 71.4


User provided reference genes

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