Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 4.4e-272 940.6 458 100.0
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 6.3e-255 883.6 459 94.1
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 2.6e-248 861.7 458 91.9
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 8.3e-247 856.7 460 91.5
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 8.3e-247 856.7 460 91.5
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.8e-246 855.5 460 91.3
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 3.0e-244 848.2 460 90.4
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.8e-241 839.0 462 89.0
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.5e-240 835.9 486 87.0
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 8.6e-236 820.1 458 88.2
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 6.4e-231 803.9 458 85.2
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 2.7e-229 798.5 458 85.6
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 6.0e-229 797.3 403 97.3
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.0e-228 796.6 471 84.7
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.5e-227 792.7 458 84.9
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 4.3e-227 791.2 458 84.7
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 5.4e-206 721.1 475 74.9
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-201 706.1 480 78.8
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.3e-199 699.9 425 80.0
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.6e-186 656.4 462 68.6
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 2.1e-186 656.0 458 67.5
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.4e-185 653.3 458 67.0
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 9.0e-185 650.6 458 66.4
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 5.9e-184 647.9 469 65.7
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.7e-183 646.4 458 65.9
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 3.8e-183 645.2 461 66.4
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 7.2e-182 641.0 463 67.0
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 9.3e-182 640.6 465 65.6
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 9.3e-182 640.6 461 66.6
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.2e-181 640.2 448 67.9
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.1e-181 639.4 461 66.2
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 2.1e-181 639.4 458 66.8
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 2.7e-181 639.0 464 66.2
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 6.1e-181 637.9 458 66.6
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.3e-180 636.7 459 66.4
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 5.1e-180 634.8 460 66.1
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 6.7e-180 634.4 458 66.6
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 6.7e-180 634.4 461 64.6
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 6.7e-180 634.4 461 64.6
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.1e-179 633.6 460 65.0
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.8e-178 629.0 430 68.1
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 4.8e-178 628.2 462 64.9
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 8.2e-178 627.5 460 65.0
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 3.1e-177 625.5 462 63.6
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.5e-176 621.7 462 63.9
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.0e-175 620.5 458 63.8
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.0e-175 620.5 462 63.4
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.7e-175 619.8 463 63.5
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 2.2e-175 619.4 457 63.5
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 3.8e-175 618.6 461 63.8
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.1e-174 617.1 461 64.4
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.9e-174 616.3 448 66.3
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 2.5e-174 615.9 462 63.0
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 3.2e-174 615.5 450 64.7
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.6e-173 613.2 430 67.0
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.8e-172 609.8 433 66.3
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.8e-172 609.8 436 66.1
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 3.0e-172 609.0 434 66.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 3.0e-172 609.0 457 65.0
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.5e-171 606.7 437 66.1
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.4e-171 604.4 433 66.5
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 9.7e-171 604.0 462 63.9
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 8.2e-170 600.9 430 66.7
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.4e-169 600.1 460 62.6
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.4e-169 599.4 463 62.2
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.1e-169 599.0 463 62.4
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 3.1e-169 599.0 450 64.0
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.1e-169 599.0 462 62.8
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 9.1e-169 597.4 463 62.2
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 7.7e-168 594.3 431 65.9
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.3e-167 593.6 462 61.9
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 8.5e-167 590.9 462 63.9
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.1e-166 590.5 445 64.5
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.5e-166 589.3 432 65.7
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 4.2e-166 588.6 433 64.2
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 7.2e-166 587.8 460 61.5
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 7.2e-166 587.8 465 61.7
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.2e-165 587.0 458 62.4
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.1e-165 586.3 458 62.2
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.7e-165 585.9 443 62.8
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.6e-165 585.5 456 62.3
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.7e-165 585.1 475 61.3
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.0e-164 583.9 449 62.6
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.8e-164 583.2 442 64.9
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.0e-164 582.4 461 61.6
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.2e-164 581.6 476 61.1
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 8.8e-164 580.9 478 59.6
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 8.8e-164 580.9 452 62.4
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.5e-163 580.1 453 62.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 2.6e-163 579.3 438 63.9
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 2.4e-161 572.8 451 62.5
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.2e-160 570.5 444 61.0
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 5.0e-159 565.1 395 66.6
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.0e-157 557.8 410 65.1
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.3e-156 556.2 462 59.7
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.0e-156 555.8 458 60.0
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.5e-155 553.5 487 57.3
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.0e-155 553.1 489 57.3
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 3.7e-154 548.9 464 58.4
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 4.8e-154 548.5 463 59.8
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 8.2e-154 547.7 457 56.9
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 2.7e-152 542.7 471 57.3
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.2e-151 539.7 444 57.9
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 7.2e-150 534.6 405 61.5
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.6e-149 532.3 366 66.7
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 6.3e-146 521.5 396 63.4
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 7.0e-145 518.1 434 55.5
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 2.3e-143 513.1 385 63.4
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.5e-142 510.4 426 54.5
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.6e-141 506.9 439 55.6
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.0e-140 504.2 384 65.4
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 3.7e-138 495.7 429 53.1
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.7e-138 495.7 401 60.3
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 5.0e-135 485.3 477 53.9
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.8e-132 476.9 538 49.4
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 3.0e-132 476.1 340 67.4
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.7e-122 443.7 353 60.9
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.5e-118 430.6 433 51.7
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.3e-118 428.3 361 57.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.6e-117 426.0 361 57.1
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.2e-108 395.6 294 66.0
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.5e-107 394.0 459 46.4
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 6.0e-104 382.1 294 61.9
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.2e-101 374.4 373 47.2
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.7e-96 356.7 465 46.2
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.0e-95 353.2 416 48.1
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 8.7e-95 351.7 262 63.7
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.8e-92 344.0 343 53.4
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 2.0e-91 340.5 442 42.8
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.4e-84 317.8 398 41.0
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 4.3e-78 296.2 201 67.7
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 1.1e-68 265.0 282 49.6
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 7.2e-65 252.3 218 59.6
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 3.7e-61 240.0 175 64.0
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.3e-58 231.5 260 56.9
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.1e-57 228.4 258 56.6
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 7.2e-49 199.1 118 72.9
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.3e-47 194.1 201 47.3
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 3.9e-47 193.4 213 50.2
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 8.8e-47 192.2 181 54.7
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.8e-45 186.4 258 50.8
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 5.9e-35 152.9 158 50.0
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 6.1e-32 142.9 112 62.5
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 6.1e-32 142.9 235 37.4
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 8.8e-31 139.0 99 63.6
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.2e-30 138.7 107 59.8
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.7e-30 136.3 87 80.5
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 2.8e-29 134.0 199 40.2
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.7e-18 98.2 60 73.3
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.5e-17 95.1 124 41.9
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 1.4e-15 88.6 93 48.4
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 3.0e-15 87.4 70 55.7
BolC6t37210H Brassica oleracea HOM05D004439 ORTHO05D043038 1.5e-14 85.1 39 100.0
BraA07t29785Z Brassica rapa HOM05D004439 ORTHO05D043038 3.9e-10 70.5 39 82.1
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.8e-07 61.6 33 75.8
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.2e-07 60.1 83 44.6
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 6.8e-07 59.7 55 47.3
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.0e-06 58.2 85 42.4


User provided reference genes

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