Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 5.2e-131 471.1 243 100.0
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 5.2e-131 471.1 243 100.0
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 2.8e-100 369.0 278 75.9
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 6.2e-92 341.3 320 62.8
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 6.2e-92 341.3 320 62.8
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 3.1e-91 339.0 298 65.8
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 5.8e-90 334.7 298 68.1
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.2e-74 283.9 349 51.6
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.0e-70 270.8 363 51.2
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.0e-65 254.2 356 49.4
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.9e-65 252.7 281 57.7
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 7.2e-64 248.1 214 60.7
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 9.4e-64 247.7 343 46.1
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.5e-58 230.3 217 56.2
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 2.4e-43 179.9 163 53.4
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.9e-41 172.9 197 61.9
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.2e-39 167.5 273 36.6
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.6e-39 167.2 192 43.8
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 2.7e-39 166.4 282 37.6
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 8.0e-39 164.9 235 49.8
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.0e-38 164.5 183 49.2
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.2e-37 161.0 176 48.3
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.2e-37 161.0 176 48.3
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 5.7e-37 158.7 172 45.3
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.2e-36 156.8 165 50.3
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 2.8e-36 156.4 161 48.4
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 2.8e-36 156.4 161 48.4
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 2.8e-36 156.4 190 46.8
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 6.3e-36 155.2 202 42.6
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 6.3e-36 155.2 195 43.1
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 6.3e-36 155.2 165 49.7
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 8.3e-36 154.8 181 48.1
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.1e-35 154.5 201 44.8
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 1.4e-35 154.1 153 51.0
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.4e-35 153.3 193 41.5
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.4e-35 153.3 193 41.5
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.4e-35 153.3 193 41.5
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 2.4e-35 153.3 161 50.9
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 3.1e-35 152.9 193 43.0
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 4.1e-35 152.5 164 48.2
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 4.1e-35 152.5 152 51.3
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 7.0e-35 151.8 166 46.4
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.2e-34 151.0 172 45.3
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 3.5e-34 149.4 170 47.1
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 3.5e-34 149.4 262 37.8
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 4.5e-34 149.1 157 49.0
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 4.5e-34 149.1 163 49.1
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 4.5e-34 149.1 200 44.5
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 4.5e-34 149.1 200 44.5
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.5e-34 149.1 154 50.0
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 5.9e-34 148.7 191 41.9
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 7.7e-34 148.3 154 50.0
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 1.0e-33 147.9 155 46.5
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.0e-33 147.9 160 46.2
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.0e-33 147.9 172 44.8
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.7e-33 147.1 137 53.3
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.2e-33 146.7 260 38.8
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.9e-33 146.4 152 49.3
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 2.9e-33 146.4 149 52.3
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.9e-33 146.4 152 50.7
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.9e-33 146.4 152 50.7
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 5.0e-33 145.6 161 45.3
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 5.0e-33 145.6 171 46.2
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 5.0e-33 145.6 171 46.2
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 5.0e-33 145.6 171 46.2
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 5.0e-33 145.6 171 46.2
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 6.5e-33 145.2 198 41.4
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.5e-32 144.1 168 45.2
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.5e-32 144.1 152 50.0
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.9e-32 143.7 165 45.5
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 5.5e-32 142.1 151 49.0
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 5.5e-32 142.1 151 49.0
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 5.5e-32 142.1 164 46.3
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.2e-31 141.0 152 48.7
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.6e-31 140.6 156 46.8
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.6e-31 140.6 156 46.8
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.7e-31 139.8 156 46.8
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 3.6e-31 139.4 164 45.7
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 6.1e-31 138.7 155 45.8
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 8.0e-31 138.3 155 50.3
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 3.0e-30 136.3 153 50.3
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 3.0e-30 136.3 146 47.9
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.5e-29 134.0 182 40.1
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.5e-29 134.0 171 43.3
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 2.0e-29 133.7 172 43.6
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 3.4e-29 132.9 166 42.8
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 3.4e-29 132.9 154 46.8
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 3.4e-29 132.9 180 43.3
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 4.4e-29 132.5 176 42.6
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 5.7e-29 132.1 165 45.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 9.8e-29 131.3 158 44.3
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.3e-28 131.0 153 43.1
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 2.2e-28 130.2 158 44.9
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 6.3e-28 128.6 188 37.8
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.4e-27 127.5 140 45.7
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.4e-27 127.5 180 42.2
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-27 127.5 163 44.2
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.8e-27 127.1 161 45.3
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.2e-26 124.4 140 45.7
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.6e-26 124.0 166 40.4
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 3.5e-26 122.9 177 40.7
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.5e-26 122.9 146 43.2
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.3e-25 120.9 162 40.7
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.1e-24 117.9 141 46.1
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 7.2e-24 115.2 174 39.1
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.2e-23 114.4 144 43.1
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 3.6e-23 112.8 145 42.8
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.8e-22 110.5 50 92.0
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.5e-21 107.5 157 40.1
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 4.4e-21 105.9 174 36.8
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 2.2e-20 103.6 136 40.4
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 3.7e-20 102.8 155 38.1
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 4.9e-20 102.4 159 40.3
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.1e-19 101.3 175 36.6
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 5.4e-19 99.0 170 34.7
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 9.2e-19 98.2 195 34.4
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.6e-18 97.4 48 83.3
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 4.5e-18 95.9 133 40.6
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 2.3e-17 93.6 46 80.4
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 6.6e-17 92.0 140 40.0
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.5e-16 90.9 44 84.1
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 1.9e-16 90.5 135 34.1
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 4.3e-16 89.4 79 53.2
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 5.6e-16 89.0 122 40.2
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 1.6e-15 87.4 55 72.7
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.6e-15 87.4 43 81.4
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 3.6e-15 86.3 45 80.0
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 4.7e-15 85.9 69 58.0
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 8.0e-15 85.1 134 34.3
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.0e-14 84.7 51 72.5
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.8e-14 84.0 103 43.7
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 5.2e-14 82.4 43 79.1
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 5.2e-14 82.4 50 68.0
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 5.2e-14 82.4 63 55.6
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 2.0e-13 80.5 104 43.3
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 3.4e-13 79.7 98 42.9
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.4e-13 79.7 44 77.3
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 9.8e-13 78.2 101 43.6
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.1e-11 74.7 45 68.9
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 1.1e-11 74.7 45 68.9
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 4.1e-11 72.8 65 52.3
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 6.0e-10 68.9 76 44.7
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 3.9e-09 66.2 133 30.8
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 5.6e-08 62.4 36 72.2
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.2e-07 61.2 43 60.5
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 8.0e-07 58.5 34 70.6


User provided reference genes

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