Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3859.7 1954 100.0
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 3781.1 1972 97.7
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3778.0 1955 97.6
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3770.3 1954 97.8
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 3703.7 1962 96.0
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 3459.8 1960 89.7
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 3411.7 1960 88.1
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3395.9 1819 94.7
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 3323.9 1970 85.9
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 3303.5 1951 86.0
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 3299.2 1959 85.7
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 3281.9 1959 85.3
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 3045.8 2006 77.4
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2799.2 1968 72.0
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2220.7 1990 57.1
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2216.4 1994 57.6
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2211.4 1994 57.3
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2195.2 1985 56.8
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2185.2 1986 57.0
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2182.9 1991 56.6
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2178.3 1991 56.7
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2172.1 1983 57.2
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2158.3 1984 56.7
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2150.9 1994 56.1
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2143.6 1983 56.3
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2140.5 2006 56.1
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2140.2 1992 56.1
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2133.2 2055 54.8
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2120.5 1985 55.5
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2118.6 1988 55.1
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2114.7 1992 55.3
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2108.2 1992 55.6
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2101.2 1989 55.4
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2082.4 1972 55.4
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2080.1 1991 54.8
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2077.8 1997 54.7
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2070.4 1971 55.1
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2067.7 1981 55.0
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2049.2 1993 54.1
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2048.9 2186 51.1
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2048.1 1985 53.8
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2040.0 1949 54.7
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2036.5 1988 53.8
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2028.8 1998 54.4
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2026.1 1982 54.0
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2013.4 1876 55.4
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2001.1 2191 49.8
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 1998.8 1977 53.1
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1997.6 1984 52.8
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1991.5 1990 52.2
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1983.8 1979 52.2
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1977.2 1825 55.3
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1976.4 2290 47.9
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1970.3 1992 52.2
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1968.4 2001 51.7
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1967.2 1992 52.1
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1963.7 2167 50.1
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1961.8 1978 51.9
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1957.2 1869 54.2
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1952.9 1990 52.0
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1940.6 2001 52.3
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1938.7 1997 51.3
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1935.6 1953 51.8
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1928.7 1945 52.9
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1926.4 1975 52.6
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1920.2 1983 51.7
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1918.7 1994 51.0
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1899.0 1982 51.3
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1886.7 1983 50.9
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1879.0 1632 59.1
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1857.4 1977 50.7
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1852.0 1974 50.5
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1842.0 1960 51.0
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1824.7 2022 49.5
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1808.1 1981 49.8
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1800.0 1949 48.9
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1744.9 1998 46.9
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1519.2 1180 63.9
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1423.7 1278 57.0
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1357.4 1276 55.0
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1328.2 1849 40.4
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1226.1 2008 37.8
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1222.2 2078 36.3
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1191.0 1081 56.9
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1152.1 2039 35.7
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1092.0 1448 44.0
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1088.6 991 56.3
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 8.0e-299 1031.6 1172 49.1
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 4.4e-289 999.2 2157 32.7
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 7.9e-254 882.1 783 57.2
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.3e-243 848.2 1132 44.1
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.5e-236 823.9 1004 44.8
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 5.3e-234 816.2 957 48.1
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 9.7e-220 768.8 521 76.2
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.3e-216 758.4 972 45.2
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 6.5e-208 729.6 912 45.5
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 2.0e-204 718.0 810 49.8
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 9.2e-162 576.2 489 59.9
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 3.2e-154 551.2 682 46.8
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 1.7e-152 545.4 523 51.6
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 7.6e-140 503.4 552 48.7
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 5.9e-124 450.7 394 58.1
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 7.6e-124 450.3 679 39.8
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 3.0e-120 438.3 341 69.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.1e-119 436.4 291 72.5
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.7e-115 422.5 478 45.6
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 2.8e-110 405.2 460 45.4
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 2.8e-102 378.6 874 31.0
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 6.1e-97 360.9 224 77.2
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 3.7e-86 325.1 258 60.9
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.9e-83 315.5 380 45.0
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 8.0e-81 307.4 341 51.6
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.1e-53 217.2 254 45.7
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.3e-50 205.3 342 37.7
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 8.1e-49 201.1 192 51.6
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 1.4e-48 200.3 192 50.5
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 2.3e-48 199.5 288 44.4
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 9.2e-45 187.6 237 47.7
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.6e-44 186.8 335 37.3
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 1.0e-43 184.1 537 28.1
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.7e-41 175.3 293 35.2
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 2.0e-39 169.9 145 64.1
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.7e-38 166.8 281 38.1
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 4.9e-38 165.2 125 67.2
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.4e-31 142.5 141 49.6
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 7.6e-31 141.4 104 71.2
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.3e-30 140.6 192 41.1
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.1e-28 133.3 579 25.2
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.5e-26 127.1 93 67.7
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 6.2e-25 121.7 191 38.7
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.4e-24 120.6 291 30.9
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 9.9e-23 114.4 107 53.3
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.1e-21 110.9 120 48.3
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.4e-21 110.5 118 48.3
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 5.5e-21 108.6 94 56.4
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 9.3e-21 107.8 140 44.3
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.0e-19 104.4 163 41.1
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.3e-19 104.0 116 50.9
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.3e-19 104.0 116 50.9
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.3e-19 104.0 89 57.3
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.3e-19 104.0 89 57.3
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.0e-19 102.8 89 56.2
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 5.1e-19 102.1 248 31.0
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 3.7e-17 95.9 145 43.4
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.1e-16 94.4 137 40.9
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 1.5e-15 90.5 131 42.0
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 1.5e-15 90.5 208 28.8
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.6e-12 80.5 95 43.2
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 1.3e-11 77.4 88 42.0
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.8e-11 77.0 58 58.6
BcaC08g43232 Brassica carinata HOM05D004963 ORTHO05D039387 1.1e-10 74.3 56 69.6
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 4.8e-09 68.9 87 43.7
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 8.2e-09 68.2 126 34.1
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 8.2e-09 68.2 72 41.7
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 9.0e-08 64.7 51 56.9
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 3.8e-06 59.3 139 29.5


User provided reference genes

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