Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 5.7e-50 200.7 105 100.0
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-37 157.9 103 83.5
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-37 157.9 103 83.5
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-37 157.9 103 83.5
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-37 157.9 103 83.5
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 2.2e-30 135.6 94 81.9
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 4.1e-24 114.8 66 93.9
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 4.5e-23 111.3 63 88.9
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 1.0e-22 110.2 63 87.3
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.0e-22 110.2 68 82.4
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-22 109.8 88 69.3
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-22 109.8 92 68.5
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.3e-22 109.8 66 87.9
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.9e-22 108.6 68 80.9
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 2.9e-22 108.6 63 85.7
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 2.9e-22 108.6 63 85.7
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.9e-22 108.6 63 85.7
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 2.9e-22 108.6 63 85.7
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.9e-22 108.6 63 85.7
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-22 108.2 58 91.4
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-22 108.2 66 86.4
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.8e-22 108.2 63 85.7
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 8.5e-22 107.1 56 96.4
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.5e-21 106.3 67 83.6
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.5e-21 106.3 63 84.1
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 2.5e-21 105.5 67 83.6
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-21 105.5 56 94.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.2e-21 105.1 63 84.1
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.2e-21 105.1 56 92.9
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 3.2e-21 105.1 58 87.9
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 7.2e-21 104.0 65 84.6
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.2e-20 103.2 88 67.0
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-20 102.8 56 94.6
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.6e-20 102.8 56 94.6
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 2.7e-20 102.1 66 81.8
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 4.7e-20 101.3 63 84.1
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 5.2e-19 97.8 63 76.2
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 6.8e-19 97.4 68 76.5
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 2.6e-18 95.5 58 77.6
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 3.4e-18 95.1 58 81.0
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 3.4e-18 95.1 58 81.0
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 3.4e-18 95.1 58 81.0
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 3.4e-18 95.1 58 79.3
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 3.4e-18 95.1 58 79.3
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 3.4e-18 95.1 58 79.3
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 4.4e-18 94.7 58 77.6
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 4.4e-18 94.7 58 79.3
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 4.4e-18 94.7 58 79.3
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 4.4e-18 94.7 58 79.3
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 4.4e-18 94.7 58 79.3
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 7.5e-18 94.0 50 96.0
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 7.5e-18 94.0 54 87.0
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 7.5e-18 94.0 58 77.6
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 7.5e-18 94.0 58 77.6
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 9.8e-18 93.6 58 79.3
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 9.8e-18 93.6 58 77.6
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 9.8e-18 93.6 58 77.6
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 9.8e-18 93.6 58 79.3
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.3e-17 93.2 58 77.6
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 1.3e-17 93.2 58 77.6
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 1.3e-17 93.2 58 77.6
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 1.3e-17 93.2 58 77.6
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 2.2e-17 92.4 58 79.3
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 2.8e-17 92.0 58 77.6
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 2.8e-17 92.0 58 77.6
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 2.8e-17 92.0 56 82.1
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.8e-17 92.0 60 75.0
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.8e-17 92.0 58 75.9
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 3.7e-17 91.7 58 77.6
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 4.8e-17 91.3 58 75.9
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 4.8e-17 91.3 58 75.9
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 4.8e-17 91.3 58 75.9
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 4.8e-17 91.3 58 74.1
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 4.8e-17 91.3 58 74.1
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 4.8e-17 91.3 58 75.9
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.8e-17 91.3 58 74.1
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 4.8e-17 91.3 58 74.1
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 6.3e-17 90.9 58 75.9
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 6.3e-17 90.9 58 75.9
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 6.3e-17 90.9 58 74.1
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 6.3e-17 90.9 58 75.9
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 6.3e-17 90.9 58 74.1
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 6.3e-17 90.9 58 77.6
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 6.3e-17 90.9 58 74.1
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 6.3e-17 90.9 58 74.1
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 6.3e-17 90.9 58 74.1
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 6.3e-17 90.9 58 74.1
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 6.3e-17 90.9 59 72.9
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 8.3e-17 90.5 58 75.9
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 8.3e-17 90.5 58 74.1
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 8.3e-17 90.5 58 75.9
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 1.1e-16 90.1 58 74.1
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 1.1e-16 90.1 58 75.9
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.1e-16 90.1 58 74.1
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.1e-16 90.1 58 72.4
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 1.1e-16 90.1 58 75.9
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.4e-16 89.7 58 74.1
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.4e-16 89.7 58 75.9
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.8e-16 89.4 58 74.1
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.8e-16 89.4 58 74.1
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.8e-16 89.4 58 75.9
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.8e-16 89.4 56 76.8
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.8e-16 89.4 58 72.4
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.8e-16 89.4 58 75.9
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 2.4e-16 89.0 58 72.4
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 2.4e-16 89.0 58 72.4
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 2.4e-16 89.0 58 72.4
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 2.4e-16 89.0 58 74.1
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 3.1e-16 88.6 58 75.9
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 3.1e-16 88.6 58 74.1
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 3.1e-16 88.6 58 72.4
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 3.1e-16 88.6 58 72.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 3.1e-16 88.6 64 67.2
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 5.4e-16 87.8 58 72.4
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 5.4e-16 87.8 58 70.7
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.4e-16 87.8 58 70.7
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 5.4e-16 87.8 58 70.7
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 5.4e-16 87.8 58 70.7
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 9.1e-16 87.0 58 70.7
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.2e-15 86.7 58 72.4
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 1.2e-15 86.7 58 70.7
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.6e-15 86.3 58 69.0
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 2.0e-15 85.9 64 65.6
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 2.0e-15 85.9 58 69.0
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.7e-15 85.5 58 69.0
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 4.5e-15 84.7 49 89.8
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.0e-14 83.6 62 67.7
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 3.8e-14 81.6 58 67.2
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 5.0e-14 81.3 58 67.2
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.9e-13 79.3 59 66.1
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 1.9e-13 79.3 58 65.5
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.5e-13 79.0 58 65.5
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 7.2e-13 77.4 71 56.3
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.6e-12 76.3 71 54.9
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.4e-11 73.2 51 68.6
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 4.0e-11 71.6 45 75.6
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 5.2e-11 71.2 58 58.6
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 3.4e-10 68.6 50 72.0
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 3.4e-10 68.6 51 66.7
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 7.5e-10 67.4 38 86.8
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 9.8e-10 67.0 58 55.2
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.3e-09 66.6 45 68.9
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 2.8e-09 65.5 66 63.6
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 3.7e-09 65.1 58 53.4
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 4.9e-09 64.7 58 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 4.9e-09 64.7 58 53.4
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 4.9e-09 64.7 45 73.3
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 4.9e-09 64.7 45 64.4
A09p57370 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-08 63.2 38 86.8
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.4e-08 62.4 45 71.1
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 3.1e-08 62.0 65 61.5
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 3.5e-07 58.5 45 62.2
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 7.7e-07 57.4 58 46.6
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 2.3e-06 55.8 38 65.8


User provided reference genes

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