Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.2e-123 446.4 218 100.0
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 6.1e-123 444.1 218 99.5
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 6.1e-123 444.1 218 99.5
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.0e-122 443.4 218 99.1
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 3.0e-122 441.8 218 98.6
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 4.1e-119 431.4 218 95.9
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 4.7e-107 391.3 218 85.8
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 1.0e-106 390.2 218 85.8
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 3.4e-105 385.2 209 86.6
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 2.2e-104 382.5 218 83.0
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 2.4e-103 379.0 218 82.1
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 4.1e-103 378.3 218 81.7
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 5.4e-103 377.9 218 83.0
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 5.8e-97 357.8 209 79.9
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 5.6e-92 341.3 218 72.0
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.1e-90 337.0 217 71.4
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 2.3e-90 335.9 218 71.6
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.2e-89 333.6 214 70.6
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 3.4e-89 332.0 217 69.6
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 9.8e-89 330.5 218 70.6
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 1.7e-88 329.7 217 71.9
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 8.3e-88 327.4 217 69.1
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.1e-87 327.0 217 68.2
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 3.2e-87 325.5 216 68.5
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 4.1e-87 325.1 218 68.3
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 4.1e-87 325.1 218 68.3
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 1.2e-86 323.6 218 69.3
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 2.7e-86 322.4 218 67.4
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 2.7e-86 322.4 218 69.3
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 3.5e-86 322.0 217 69.6
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 7.8e-86 320.9 218 67.4
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.0e-85 320.5 218 68.8
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.0e-85 320.5 214 69.2
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 1.7e-85 319.7 218 67.0
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.7e-85 319.7 218 67.4
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.7e-85 319.7 218 67.0
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 2.3e-85 319.3 217 67.3
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 3.0e-85 318.9 218 67.9
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 8.6e-85 317.4 218 67.9
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 1.5e-84 316.6 219 69.4
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 1.5e-84 316.6 212 69.8
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.5e-84 316.6 210 68.6
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 2.5e-84 315.8 220 67.3
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.3e-84 315.5 219 68.9
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 4.3e-84 315.1 219 69.4
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 4.3e-84 315.1 219 69.9
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 5.6e-84 314.7 217 65.9
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 5.6e-84 314.7 219 68.5
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 9.5e-84 313.9 219 69.4
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.2e-83 313.5 218 65.6
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.2e-83 313.5 217 66.8
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.1e-83 312.8 216 66.2
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 2.8e-83 312.4 210 67.1
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.6e-83 312.0 218 68.3
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 6.2e-83 311.2 218 67.0
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.4e-82 310.1 218 67.4
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 1.8e-82 309.7 220 69.1
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 2.3e-82 309.3 210 66.7
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 2.3e-82 309.3 218 67.0
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 3.1e-82 308.9 207 67.6
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 8.9e-82 307.4 208 70.2
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.5e-81 306.6 210 67.1
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.0e-81 306.2 214 65.4
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 2.6e-81 305.8 208 68.8
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 2.6e-81 305.8 207 67.1
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 5.8e-81 304.7 214 66.8
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 3.8e-80 302.0 208 67.8
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.9e-79 299.7 208 67.8
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 3.2e-79 298.9 217 62.7
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 3.2e-79 298.9 221 66.5
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.1e-79 298.5 213 65.3
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 7.1e-79 297.7 208 66.3
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.2e-78 297.0 208 67.8
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.6e-78 296.6 216 64.4
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.6e-78 296.6 248 60.1
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.6e-78 296.6 208 66.3
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.6e-78 296.6 216 66.2
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 2.7e-78 295.8 217 63.6
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 2.7e-78 295.8 218 65.1
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 3.5e-78 295.4 214 64.0
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 7.8e-78 294.3 218 64.2
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 7.8e-78 294.3 218 63.3
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.7e-77 293.1 218 63.8
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.5e-76 290.0 229 62.4
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 2.5e-76 289.3 210 65.7
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 2.5e-76 289.3 210 65.2
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 9.6e-76 287.3 218 61.5
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.8e-75 285.8 212 59.4
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 3.6e-75 285.4 215 63.7
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 3.6e-75 285.4 221 64.3
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 4.0e-74 282.0 216 59.7
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 5.2e-74 281.6 218 61.9
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 6.9e-74 281.2 210 61.0
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 8.9e-74 280.8 216 60.6
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.2e-73 280.4 207 61.8
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.4e-72 274.6 199 65.3
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.4e-71 272.7 217 59.9
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 4.6e-70 268.5 191 63.4
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.3e-69 266.2 205 62.4
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 5.1e-69 265.0 217 56.2
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 1.5e-68 263.5 209 57.9
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 9.6e-68 260.8 208 55.3
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 8.1e-67 257.7 193 62.7
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.4e-66 256.9 204 55.9
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.0e-66 255.4 198 62.6
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 6.4e-64 248.1 178 64.6
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.4e-63 246.9 198 61.1
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.2e-62 243.8 204 57.4
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.3e-61 239.6 170 67.6
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 5.1e-61 238.4 205 52.7
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 6.2e-59 231.5 206 49.0
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 5.3e-58 228.4 146 69.9
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.8e-56 222.2 199 55.8
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.4e-55 220.3 144 69.4
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 4.6e-54 215.3 222 50.0
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 7.9e-54 214.5 140 71.4
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 7.9e-54 214.5 144 66.7
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.0e-53 214.2 212 52.4
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.3e-53 213.0 194 49.0
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.1e-50 204.1 242 49.2
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.4e-50 203.0 212 50.5
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 2.9e-48 196.1 212 44.8
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.9e-48 195.3 126 70.6
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.3e-45 187.2 171 50.9
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 9.6e-44 181.0 199 47.7
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.5e-40 167.9 163 50.9
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.2e-38 164.1 207 44.9
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.0e-32 142.1 110 60.0
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 7.2e-31 138.3 110 59.1
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 7.9e-30 134.8 207 35.7
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.1e-26 124.4 70 74.3
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.2e-25 120.9 68 80.9
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.2e-22 110.9 138 43.5
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.1e-22 110.2 203 35.5
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.5e-20 104.0 209 32.1
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.1e-18 97.8 116 45.7
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.1e-18 97.8 116 45.7
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 5.3e-18 95.5 77 57.1
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 5.3e-18 95.5 72 62.5
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 7.0e-18 95.1 116 44.0
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.0e-17 93.6 203 27.1
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 8.0e-14 81.6 208 28.4
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.0e-13 81.3 56 62.5
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.0e-13 81.3 55 65.5
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 1.2e-12 77.8 84 53.6
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 3.3e-12 76.3 84 52.4
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.4e-12 75.9 50 68.0
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.2e-11 73.6 108 38.0
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.5e-07 60.8 47 59.6
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.6e-06 57.4 40 60.0


User provided reference genes

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