Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2551.2 1271 100.0
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 2538.1 1267 99.8
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2523.8 1271 99.0
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 2513.8 1267 99.0
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2482.2 1273 97.5
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 2468.0 1267 96.6
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 2457.9 1268 96.0
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 2441.4 1267 95.3
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 2433.3 1267 94.6
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 2427.9 1267 94.6
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 2422.5 1267 94.4
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 2397.9 1270 93.0
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 2342.0 1267 90.4
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 2216.0 1266 84.7
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 2211.0 1268 84.7
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 2207.2 1268 84.5
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 2206.4 1267 84.5
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 2205.6 1270 84.2
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 2205.3 1264 84.7
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 2204.5 1268 84.4
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 2201.0 1267 84.1
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 2198.7 1260 85.4
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 2195.6 1271 83.8
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 2193.3 1260 84.9
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 2192.5 1267 84.5
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 2191.0 1268 84.0
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2190.6 1267 84.4
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2186.8 1266 83.4
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2185.6 1267 84.3
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 2182.1 1267 83.7
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 2181.8 1267 84.1
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2180.6 1270 83.4
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2180.2 1270 83.1
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2180.2 1267 83.7
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2179.4 1267 83.5
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 2178.3 1268 82.5
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 2172.5 1267 83.0
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 2171.7 1267 82.5
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 2171.0 1267 82.6
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2170.2 1268 82.4
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 2166.7 1265 83.6
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2165.6 1268 82.0
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 2164.0 1265 83.0
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 2164.0 1267 82.3
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 2163.3 1266 81.6
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 2161.7 1266 83.1
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2161.3 1269 82.1
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 2161.3 1263 83.0
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2160.6 1266 82.9
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2159.8 1267 82.9
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2159.4 1268 82.6
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2156.7 1072 100.0
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 2155.9 1270 81.8
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2155.6 1266 82.7
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 2155.6 1267 82.6
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 2155.6 1275 82.0
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 2150.9 1271 81.8
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 2150.2 1267 82.8
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2150.2 1267 82.5
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 2147.5 1267 82.5
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2146.3 1267 82.2
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2145.2 1267 82.2
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2143.2 1259 82.6
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 2140.5 1271 81.2
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 2139.4 1267 81.1
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2139.0 1238 83.8
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 2135.9 1267 81.9
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 2135.1 1268 81.8
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 2133.6 1266 81.6
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 2132.1 1272 81.0
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 2131.3 1266 82.4
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 2127.8 1271 81.0
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2127.1 1267 81.8
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 2125.5 1263 81.6
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 2124.7 1267 81.3
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 2124.4 1267 81.9
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 2119.4 1265 81.4
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 2118.2 1248 82.5
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 2118.2 1263 81.2
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2113.2 1271 80.5
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 2110.1 1206 85.2
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 2110.1 1271 80.3
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 2106.6 1267 80.7
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2103.6 1277 80.0
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 2079.3 1274 81.2
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 2077.4 1271 79.5
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 2075.4 1264 79.9
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 2073.5 1264 79.6
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 2071.6 1271 79.0
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 2070.0 1259 80.5
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2068.5 1265 79.9
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2051.6 1270 78.1
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2028.8 1264 78.6
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 2015.7 1267 77.7
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 1999.2 1263 77.8
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1971.1 1159 83.1
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1945.2 1277 74.5
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1892.5 1278 72.5
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1892.1 1271 73.2
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1866.7 1251 74.3
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1838.2 1266 71.6
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1837.0 1191 76.0
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1799.6 1089 80.3
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1790.4 1130 79.4
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1781.5 1268 70.3
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1764.6 1267 70.4
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1616.3 966 79.9
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1573.1 1322 62.4
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1542.7 1047 72.6
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1360.1 1264 59.2
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1356.7 814 80.5
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1332.0 1330 53.5
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1318.5 1395 52.8
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 0.0e+00 1236.9 725 81.9
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1157.5 1084 58.4
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1124.8 808 71.2
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 1.1e-261 907.5 1241 42.1
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 1.9e-261 906.7 570 78.1
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.1e-256 891.0 502 86.3
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-227 792.7 653 62.5
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 6.8e-214 748.8 527 71.7
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 2.2e-196 690.6 450 76.4
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 2.1e-183 647.5 389 83.0
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 1.3e-127 462.2 359 66.0
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 1.3e-116 425.6 313 71.2
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 7.2e-107 393.3 270 73.7
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 6.4e-79 300.4 477 41.5
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 3.2e-70 271.6 169 75.1
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 1.0e-68 266.5 169 74.6
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 8.6e-68 263.5 169 73.4
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.3e-63 249.6 138 89.9
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 1.6e-58 232.6 234 54.7
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 2.6e-48 198.7 116 79.3
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 4.3e-43 181.4 155 66.5
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.3e-39 169.9 91 85.7
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 1.1e-38 166.8 192 52.6
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 5.5e-30 137.9 101 61.4
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 4.8e-26 124.8 104 61.5


User provided reference genes

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