Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p17560 Brassica napus HOM05D015966 ORTHO05D019956 1.6e-55 219.2 112 100.0
BolC6t36950H Brassica oleracea HOM05D015966 ORTHO05D019956 1.6e-55 219.2 112 100.0
C03p66290 Brassica napus HOM05D015966 ORTHO05D019956 2.2e-52 208.8 112 95.5
BolC3t18901H Brassica oleracea HOM05D015966 ORTHO05D019956 2.2e-52 208.8 112 95.5
BolC9t54896H Brassica oleracea HOM05D015966 ORTHO05D019956 1.9e-48 195.7 112 92.0
C09p19910 Brassica napus HOM05D015966 ORTHO05D019956 2.5e-48 195.3 113 91.2
BcaC04g22383 Brassica carinata HOM05D015966 ORTHO05D019956 2.5e-43 178.7 92 100.0
BcaC08g44329 Brassica carinata HOM05D031856 ORTHO05D000065 2.3e-25 119.0 63 100.0
BcaC09g48652 Brassica carinata HOM05D001728 ORTHO05D004174 4.7e-18 94.7 66 78.8
BolC1t04696H Brassica oleracea HOM05D001728 ORTHO05D004174 4.7e-18 94.7 66 78.8
Thhalv10021196m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 6.1e-18 94.4 66 77.3
BcaB05g22858 Brassica carinata HOM05D015966 ORTHO05D092322 8.0e-18 94.0 64 78.1
Sp3g15220 Schrenkiella parvula HOM05D001728 ORTHO05D004174 8.0e-18 94.0 67 76.1
C01p47260 Brassica napus HOM05D001728 ORTHO05D004174 1.4e-17 93.2 66 77.3
A01p37320 Brassica napus HOM05D001728 ORTHO05D004174 4.0e-17 91.7 66 77.3
BraA01t03790Z Brassica rapa HOM05D001728 ORTHO05D004174 4.0e-17 91.7 66 77.3
AL3G29980 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 2.2e-15 85.9 78 62.8
AT3G17000 Arabidopsis thaliana HOM05D001728 ORTHO05D004174 2.2e-15 85.9 69 65.2
CARHR092250 Cardamine hirsuta HOM05D001728 ORTHO05D004174 3.7e-15 85.1 79 65.8
Carub.0003s1675 Capsella rubella HOM05D001728 ORTHO05D004174 3.5e-13 78.6 63 71.4
Thhalv10025677m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 1.9e-11 72.8 71 59.2
Aa31LG8G4040 Aethionema arabicum HOM05D001728 ORTHO05D004174 1.2e-10 70.1 69 55.1
Ciclev10005518m.g Citrus clementina HOM05D001728 ORTHO05D004174 4.7e-10 68.2 62 59.7
Sabra08G0080000 Salix brachista HOM05D001728 ORTHO05D004174 6.1e-10 67.8 62 59.7
BcaNung00213 Brassica carinata HOM05D001728 ORTHO05D004174 8.0e-10 67.4 71 57.7
Potri.008G106300 Populus trichocarpa HOM05D001728 ORTHO05D004174 1.0e-09 67.0 76 50.0
Sp7g14760 Schrenkiella parvula HOM05D001728 ORTHO05D004174 1.4e-09 66.6 61 62.3
AL7G38800 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 2.3e-09 65.9 51 68.6
CSS0020178 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 3.0e-09 65.5 52 63.5
Cpa.g.sc9.71 Carica papaya HOM05D001728 ORTHO05D004174 6.8e-09 64.3 63 57.1
Manes.03G203400 Manihot esculenta HOM05D001728 ORTHO05D004174 6.8e-09 64.3 58 53.4
THA.LOC104818887 Tarenaya hassleriana HOM05D001728 ORTHO05D004174 6.8e-09 64.3 62 54.8
Atru.chr4.3016 Acer truncatum HOM05D001728 ORTHO05D004174 8.8e-09 63.9 70 51.4
CARHR222630 Cardamine hirsuta HOM05D001728 ORTHO05D004174 1.2e-08 63.5 65 56.9
Hund11964 Selenicereus undatus HOM05D001728 ORTHO05D004174 1.2e-08 63.5 53 54.7
THA.LOC104820301 Tarenaya hassleriana HOM05D001728 ORTHO05D004174 1.2e-08 63.5 59 59.3
Potri.010G143900 Populus trichocarpa HOM05D001728 ORTHO05D004174 2.6e-08 62.4 43 69.8
Aa31LG10G5870 Aethionema arabicum HOM05D001728 ORTHO05D004174 3.4e-08 62.0 51 66.7
A01p21340 Brassica napus HOM05D001728 ORTHO05D004174 3.4e-08 62.0 71 53.5
BraA01t02040Z Brassica rapa HOM05D001728 ORTHO05D004174 3.4e-08 62.0 71 53.5
HanXRQChr05g0148261 Helianthus annuus HOM05D001728 ORTHO05D004174 4.4e-08 61.6 81 48.1
HanXRQChr15g0466661 Helianthus annuus HOM05D001728 ORTHO05D004174 4.4e-08 61.6 70 48.6
Manes.15G005200 Manihot esculenta HOM05D001728 ORTHO05D004174 4.4e-08 61.6 62 51.6
BcaC09g50319 Brassica carinata HOM05D001728 ORTHO05D004174 5.7e-08 61.2 71 53.5
C01p26690 Brassica napus HOM05D001728 ORTHO05D004174 5.7e-08 61.2 71 53.5
MD16G1155400 Malus domestica HOM05D001728 ORTHO05D004174 5.7e-08 61.2 76 48.7
RcHm_v2.0_Chr4g0424811 Rosa chinensis HOM05D001728 ORTHO05D004174 5.7e-08 61.2 76 52.6
Thecc.04G299100 Theobroma cacao HOM05D001728 ORTHO05D004174 7.5e-08 60.8 70 48.6
BcaB08g36357 Brassica carinata HOM05D015966 ORTHO05D000065 9.8e-08 60.5 40 75.0
Carub.0007s2527 Capsella rubella HOM05D001728 ORTHO05D004174 9.8e-08 60.5 71 53.5
ECA246G2493 Erigeron canadensis HOM05D001728 ORTHO05D004174 9.8e-08 60.5 67 50.7
Prupe.1G119000 Prunus persica HOM05D001728 ORTHO05D004174 9.8e-08 60.5 64 50.0
BolC1t02610H Brassica oleracea HOM05D001728 ORTHO05D004174 2.2e-07 59.3 71 52.1
CSS0047464 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 2.2e-07 59.3 59 52.5
CiPaw.02G075700 Carya illinoinensis HOM05D001728 ORTHO05D004174 2.2e-07 59.3 60 46.7
Gohir.D10G178500 Gossypium hirsutum HOM05D001728 ORTHO05D004174 2.2e-07 59.3 83 42.2
Sabra10G0111100 Salix brachista HOM05D001728 ORTHO05D004174 2.2e-07 59.3 62 53.2
ClCG05G006510 Citrullus lanatus HOM05D001728 ORTHO05D004174 2.8e-07 58.9 60 46.7
Hund03118 Selenicereus undatus HOM05D001728 ORTHO05D004174 2.8e-07 58.9 53 49.1
TWI53G1778 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 2.8e-07 58.9 68 45.6
Gohir.A09G234900 Gossypium hirsutum HOM05D001728 ORTHO05D004174 3.7e-07 58.5 56 57.1
Gohir.A10G171400 Gossypium hirsutum HOM05D001728 ORTHO05D004174 3.7e-07 58.5 83 42.2
Rhsim02G0004600 Rhododendron simsii HOM05D001728 ORTHO05D004174 3.7e-07 58.5 53 54.7
GSVIVG01035008001 Vitis vinifera HOM05D001728 ORTHO05D004174 3.7e-07 58.5 61 50.8
Hma1.2p1_0013F.1_g008660 Hydrangea macrophylla HOM05D001728 ORTHO05D004174 6.3e-07 57.8 60 48.3
Lj3A830T25 Lonicera japonica HOM05D001728 ORTHO05D004174 6.3e-07 57.8 52 57.7
MD13G1155700 Malus domestica HOM05D001728 ORTHO05D004174 8.3e-07 57.4 66 47.0
C05p49430 Brassica napus HOM05D056811 ORTHO05D042642 1.4e-06 56.6 47 66.0
BolC5t33689H Brassica oleracea HOM05D056811 ORTHO05D042642 1.4e-06 56.6 47 66.0
CsaV3_3G015120 Cucumis sativus L. HOM05D001728 ORTHO05D004174 1.4e-06 56.6 42 61.9
FvH4_4g19560 Fragaria vesca HOM05D001728 ORTHO05D004174 1.4e-06 56.6 64 53.1
FAN07G1735 Fragaria x ananassa HOM05D001728 ORTHO05D004174 1.4e-06 56.6 62 56.5
FAN12G2115 Fragaria x ananassa HOM05D001728 ORTHO05D004174 1.4e-06 56.6 64 53.1
Gohir.D09G235700 Gossypium hirsutum HOM05D001728 ORTHO05D004174 1.4e-06 56.6 71 46.5
Gorai.006G258700 Gossypium raimondii HOM05D001728 ORTHO05D004174 1.4e-06 56.6 71 46.5
Gorai.011G199600 Gossypium raimondii HOM05D001728 ORTHO05D004174 1.4e-06 56.6 60 55.0
Nitab4.5_0002150g0220 Nicotiana tabacum HOM05D001728 ORTHO05D004174 1.4e-06 56.6 60 46.7
TWI73G0756 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 1.4e-06 56.6 61 45.9
CSS0014848 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 1.8e-06 56.2 48 54.2
MELO3C006710.2 Cucumis melo HOM05D001728 ORTHO05D004174 1.8e-06 56.2 66 42.4
vmacro15187 Vaccinium macrocarpon HOM05D001728 ORTHO05D004174 1.8e-06 56.2 54 53.7
CiPaw.01G139100 Carya illinoinensis HOM05D001728 ORTHO05D004174 2.4e-06 55.8 59 50.8
Duzib052G1178 Durio zibethinus HOM05D001728 ORTHO05D004174 2.4e-06 55.8 43 65.1
Duzib151G0474 Durio zibethinus HOM05D001728 ORTHO05D004174 2.4e-06 55.8 59 54.2
Eucgr.A00356 Eucalyptus grandis HOM05D001728 ORTHO05D004174 2.4e-06 55.8 43 62.8
Sed0012381 Sechium edule HOM05D001728 ORTHO05D004174 2.4e-06 55.8 65 46.2
Cfa015326 Carpinus fangiana HOM05D001728 ORTHO05D004174 3.1e-06 55.5 60 46.7
Nitab4.5_0013613g0010 Nicotiana tabacum HOM05D001728 ORTHO05D004174 3.1e-06 55.5 47 55.3
Duzib212G0357 Durio zibethinus HOM05D001728 ORTHO05D004174 4.1e-06 55.1 68 44.1
PSO170G6117 Papaver somniferum HOM05D001728 ORTHO05D004174 4.1e-06 55.1 65 47.7
PSO357G0012 Papaver somniferum HOM05D001728 ORTHO05D004174 4.1e-06 55.1 65 47.7
Sc19g0003160 Simmondsia chinensis HOM05D001728 ORTHO05D004174 4.1e-06 55.1 47 61.7
TWI09G0044 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 4.1e-06 55.1 60 45.0
Actinidia14261 Actinidia chinensis HOM05D001728 ORTHO05D004174 5.4e-06 54.7 78 43.6
Lsat_1_v5_gn_1_41000 Lactuca sativa HOM05D001728 ORTHO05D004174 5.4e-06 54.7 33 69.7
SGA_v2.0_scaffold18G08401 Striga asiatica HOM05D001728 ORTHO05D004174 5.4e-06 54.7 45 57.8
Dinv44292 Davidia involucrata HOM05D001728 ORTHO05D004174 7.0e-06 54.3 31 74.2
CANSAT78G2180 Cannabis sativa HOM05D001728 ORTHO05D004174 9.1e-06 53.9 32 71.9
Peaxi162Scf00017g00816 Petunia axillaris HOM05D001728 ORTHO05D004174 9.1e-06 53.9 47 53.2
Sed0009760 Sechium edule HOM05D001728 ORTHO05D004174 9.1e-06 53.9 52 48.1


User provided reference genes

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