Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 3.4e-74 281.6 143 100.0
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 3.4e-74 281.6 143 100.0
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 2.5e-56 222.2 132 89.4
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 4.7e-55 218.0 132 87.9
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 7.2e-48 194.1 109 93.6
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 3.4e-37 158.7 158 58.9
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 9.8e-37 157.1 160 58.1
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 1.2e-34 150.2 158 55.7
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 2.0e-34 149.4 74 100.0
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 2.0e-34 149.4 121 66.9
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 1.7e-33 146.4 157 53.5
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.7e-33 146.4 157 53.5
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 3.8e-33 145.2 158 54.4
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 8.6e-33 144.1 158 53.8
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.1e-32 143.7 157 52.9
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 5.6e-32 141.4 157 52.9
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 5.6e-32 141.4 157 51.6
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 7.3e-32 141.0 157 52.2
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 1.2e-31 140.2 167 49.7
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 1.2e-31 140.2 167 49.7
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.2e-31 140.2 71 98.6
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.2e-31 140.2 71 98.6
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 1.2e-31 140.2 71 98.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.2e-31 140.2 71 98.6
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.2e-31 140.2 71 98.6
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 2.1e-31 139.4 157 53.5
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 2.1e-31 139.4 157 51.6
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 2.8e-31 139.0 71 97.2
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 2.8e-31 139.0 157 52.2
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 8.0e-31 137.5 157 52.2
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.4e-30 136.7 71 94.4
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 3.0e-30 135.6 166 52.4
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 3.0e-30 135.6 71 94.4
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 4.0e-30 135.2 71 93.0
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 5.2e-30 134.8 71 93.0
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 8.9e-30 134.0 71 91.5
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 8.9e-30 134.0 157 51.6
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 8.9e-30 134.0 157 51.6
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 8.9e-30 134.0 71 93.0
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 8.9e-30 134.0 157 52.2
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 2.0e-29 132.9 71 90.1
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 2.0e-29 132.9 71 90.1
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 2.0e-29 132.9 71 90.1
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.0e-29 132.9 71 90.1
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.0e-29 132.9 71 90.1
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 2.0e-29 132.9 71 90.1
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 2.0e-29 132.9 71 90.1
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 3.4e-29 132.1 71 90.1
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 4.4e-29 131.7 71 88.7
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 5.8e-29 131.3 71 88.7
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 5.8e-29 131.3 71 88.7
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 7.5e-29 131.0 71 88.7
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 7.5e-29 131.0 71 90.1
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 7.5e-29 131.0 71 90.1
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 7.5e-29 131.0 71 90.1
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 7.5e-29 131.0 71 90.1
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 7.5e-29 131.0 71 88.7
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 9.8e-29 130.6 71 88.7
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 9.8e-29 130.6 71 87.3
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 9.8e-29 130.6 71 87.3
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 9.8e-29 130.6 157 51.6
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 1.3e-28 130.2 71 87.3
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 1.3e-28 130.2 71 87.3
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 1.3e-28 130.2 71 87.3
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-28 130.2 71 87.3
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-28 130.2 71 87.3
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.3e-28 130.2 151 51.7
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 1.3e-28 130.2 71 87.3
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 1.3e-28 130.2 71 88.7
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 1.7e-28 129.8 71 87.3
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 2.2e-28 129.4 152 50.7
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 2.2e-28 129.4 71 87.3
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 2.2e-28 129.4 71 85.9
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 2.9e-28 129.0 71 87.3
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.9e-28 129.0 157 47.1
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 3.7e-28 128.6 71 85.9
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 3.7e-28 128.6 71 85.9
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 3.7e-28 128.6 71 85.9
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 3.7e-28 128.6 71 85.9
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 3.7e-28 128.6 71 85.9
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 3.7e-28 128.6 71 85.9
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 4.9e-28 128.3 71 87.3
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 4.9e-28 128.3 71 87.3
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 8.3e-28 127.5 71 85.9
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 1.1e-27 127.1 71 85.9
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 2.4e-27 125.9 71 85.9
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 4.1e-27 125.2 157 49.0
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 5.4e-27 124.8 71 84.5
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 5.4e-27 124.8 71 83.1
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 5.4e-27 124.8 149 49.0
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 7.0e-27 124.4 71 84.5
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 9.2e-27 124.0 71 83.1
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 1.2e-26 123.6 71 81.7
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.6e-26 123.2 71 84.5
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.6e-26 123.2 71 84.5
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 2.0e-26 122.9 71 80.3
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 2.0e-26 122.9 71 80.3
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.7e-26 122.5 71 83.1
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.7e-26 122.5 71 83.1
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.7e-26 122.5 71 83.1
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.7e-26 122.5 71 83.1
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 3.5e-26 122.1 71 81.7
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 1.1e-24 117.1 157 45.9
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 2.5e-24 115.9 63 88.9
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 2.1e-23 112.8 157 44.6
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 2.8e-23 112.5 155 44.5
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 1.1e-22 110.5 71 71.8
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 1.4e-22 110.2 63 82.5
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 2.3e-22 109.4 157 43.9
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 3.4e-21 105.5 159 40.9
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 8.3e-20 100.9 157 42.0
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 4.3e-16 88.6 76 57.9
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 2.8e-15 85.9 157 36.3


User provided reference genes

Program Settings