Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 2.2e-94 349.0 176 100.0
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 2.6e-39 166.0 168 59.5
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 2.6e-39 166.0 168 59.5
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 5.8e-39 164.9 146 67.1
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.3e-38 163.7 178 56.2
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.3e-38 163.7 178 56.7
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 2.2e-38 162.9 177 57.6
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 2.2e-38 162.9 177 57.6
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 2.2e-38 162.9 177 57.6
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 3.7e-38 162.2 178 55.1
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 3.7e-38 162.2 178 56.7
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 6.4e-38 161.4 178 56.2
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 1.1e-37 160.6 178 56.2
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 2.4e-37 159.5 172 55.2
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 2.1e-36 156.4 178 54.5
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 6.0e-36 154.8 178 53.9
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 1.3e-35 153.7 178 53.4
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 1.7e-35 153.3 178 53.4
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.7e-35 153.3 175 53.1
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.5e-34 150.2 178 52.8
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 1.4e-32 143.7 178 50.6
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.2e-25 120.6 180 45.6
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.2e-25 120.6 168 44.6
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 1.8e-24 116.7 178 42.7
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 2.6e-23 112.8 178 42.1
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 2.6e-23 112.8 178 41.6
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 2.6e-23 112.8 178 41.6
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 9.9e-23 110.9 179 43.0
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.7e-22 110.2 179 41.9
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 2.9e-22 109.4 72 76.4
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 6.4e-22 108.2 178 41.0
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 8.4e-22 107.8 178 41.0
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 1.1e-21 107.5 182 37.4
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-21 107.1 66 78.8
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-21 107.1 66 78.8
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-21 107.1 66 78.8
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.4e-21 107.1 66 78.8
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.4e-21 107.1 66 78.8
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.4e-21 107.1 178 41.0
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 4.2e-21 105.5 176 40.9
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 5.4e-21 105.1 179 41.9
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 5.4e-21 105.1 178 41.0
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 9.3e-21 104.4 177 40.7
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 9.3e-21 104.4 171 44.4
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.2e-20 104.0 174 42.0
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.2e-20 104.0 171 44.4
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 1.6e-20 103.6 162 43.8
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.6e-20 103.6 179 41.3
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 3.5e-20 102.4 176 40.3
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 3.5e-20 102.4 162 45.1
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 4.6e-20 102.1 178 39.3
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 4.6e-20 102.1 179 41.9
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 6.0e-20 101.7 179 40.2
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 7.8e-20 101.3 176 38.6
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 7.8e-20 101.3 176 38.6
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.8e-20 101.3 182 36.8
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 7.8e-20 101.3 162 44.4
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.0e-19 100.9 184 37.5
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.3e-19 100.5 182 36.8
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.3e-19 100.5 182 36.8
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.3e-19 100.5 179 39.7
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.7e-19 100.1 180 38.3
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.7e-19 100.1 171 42.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.7e-19 100.1 179 39.7
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.7e-19 100.1 179 41.3
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.7e-19 100.1 171 42.7
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 1.7e-19 100.1 179 39.7
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 2.3e-19 99.8 182 39.0
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.3e-19 99.8 176 40.3
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 5.1e-19 98.6 181 37.0
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 6.6e-19 98.2 171 41.5
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 8.7e-19 97.8 181 39.2
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 8.7e-19 97.8 183 37.7
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.1e-18 97.4 176 39.8
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-18 97.4 178 39.3
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 1.9e-18 96.7 178 38.2
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.9e-18 96.7 166 40.4
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 2.5e-18 96.3 184 38.6
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 2.5e-18 96.3 178 38.8
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 4.3e-18 95.5 174 40.8
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 4.3e-18 95.5 178 38.8
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 5.6e-18 95.1 181 38.7
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 5.6e-18 95.1 174 40.2
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 7.3e-18 94.7 166 38.6
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.3e-18 94.7 181 38.7
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 7.3e-18 94.7 176 36.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.3e-17 94.0 177 40.7
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.6e-17 93.6 164 39.6
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 2.1e-17 93.2 179 40.8
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 2.8e-17 92.8 174 40.2
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 3.6e-17 92.4 165 38.2
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 3.6e-17 92.4 181 36.5
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 6.2e-17 91.7 177 38.4
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 8.1e-17 91.3 178 37.6
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.4e-16 90.5 177 36.7
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.4e-16 90.5 206 34.0
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.8e-16 90.1 179 37.4
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.8e-16 90.1 203 34.5
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 2.4e-16 89.7 177 36.2
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 2.4e-16 89.7 173 35.8
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 3.1e-16 89.4 174 39.1
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 3.1e-16 89.4 167 36.5
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 6.9e-16 88.2 173 35.3
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.2e-15 87.4 175 37.7
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 7.6e-15 84.7 166 36.1
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.3e-14 84.0 177 36.7
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.7e-14 83.6 170 37.6
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.7e-14 83.6 177 34.5
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.7e-14 83.6 177 34.5
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 2.2e-14 83.2 173 35.3
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 2.2e-14 83.2 181 35.4
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.9e-14 82.8 172 37.2
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 2.9e-14 82.8 177 36.7
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.8e-14 82.4 172 37.2
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.9e-14 82.0 172 37.2
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 6.4e-14 81.6 66 63.6
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 6.4e-14 81.6 172 36.0
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 6.4e-14 81.6 146 38.4
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.4e-13 80.5 177 35.0
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 2.4e-13 79.7 194 35.1
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.4e-13 79.7 172 37.2
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.2e-13 79.3 179 34.6
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 4.2e-13 79.0 144 37.5
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 5.4e-13 78.6 173 34.1
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 9.3e-13 77.8 168 33.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 2.1e-12 76.6 165 33.9
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.8e-11 73.6 146 35.6
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 6.7e-11 71.6 183 29.0
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 6.7e-11 71.6 176 34.1
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.6e-09 67.0 164 32.3
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 3.7e-09 65.9 166 31.9
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.4e-08 63.9 139 38.8
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 2.0e-07 60.1 175 30.3
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 7.6e-07 58.2 153 26.1


User provided reference genes

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