Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 2.1e-121 439.1 234 100.0
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 2.5e-106 389.0 234 90.6
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 2.2e-102 375.9 234 88.0
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 1.2e-92 343.6 237 82.3
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 2.1e-92 342.8 237 82.3
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 2.7e-92 342.4 237 81.9
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 1.2e-89 333.6 230 81.7
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 3.5e-76 288.9 206 79.1
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 3.5e-76 288.9 206 79.1
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 1.4e-69 266.9 240 68.3
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 1.2e-63 247.3 243 61.3
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 3.4e-63 245.7 217 63.6
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 7.6e-63 244.6 235 62.1
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 7.9e-60 234.6 246 58.1
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 1.0e-59 234.2 247 63.2
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 1.5e-58 230.3 239 59.4
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 6.1e-52 208.4 145 75.9
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 3.9e-51 205.7 188 63.8
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 2.4e-48 196.4 129 77.5
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 2.4e-48 196.4 129 77.5
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 1.2e-47 194.1 220 54.5
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 1.7e-41 173.7 227 47.1
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 3.0e-27 126.3 191 44.0
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 5.7e-26 122.1 117 53.0
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 3.1e-24 116.3 132 49.2
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 5.3e-24 115.5 127 48.8
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 9.1e-24 114.8 131 48.1
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 2.0e-23 113.6 103 58.3
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 2.7e-23 113.2 123 48.0
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 4.5e-23 112.5 131 47.3
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 4.5e-23 112.5 113 50.4
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 4.5e-23 112.5 112 51.8
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 4.5e-23 112.5 123 48.0
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 4.5e-23 112.5 142 43.7
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 1.7e-22 110.5 113 49.6
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 2.2e-22 110.2 146 41.8
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 2.9e-22 109.8 183 38.3
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 2.9e-22 109.8 217 35.9
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 2.9e-22 109.8 94 57.4
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 2.9e-22 109.8 113 52.2
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 3.8e-22 109.4 189 40.2
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 3.8e-22 109.4 183 38.3
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 5.0e-22 109.0 200 41.0
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 6.5e-22 108.6 123 43.1
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 8.5e-22 108.2 104 56.7
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 8.5e-22 108.2 124 44.4
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 8.5e-22 108.2 182 39.6
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 1.1e-21 107.8 102 52.0
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 1.9e-21 107.1 117 48.7
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.9e-21 107.1 217 35.9
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 4.2e-21 105.9 125 41.6
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 4.2e-21 105.9 126 46.8
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.6e-20 104.0 220 35.5
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 2.1e-20 103.6 139 42.4
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 2.7e-20 103.2 132 44.7
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 2.7e-20 103.2 103 54.4
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 6.1e-20 102.1 108 50.9
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 8.0e-20 101.7 196 36.7
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 8.0e-20 101.7 122 44.3
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 1.4e-19 100.9 138 41.3
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 1.4e-19 100.9 138 41.3
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 1.4e-19 100.9 135 44.4
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 2.3e-19 100.1 129 40.3
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 4.0e-19 99.4 102 51.0
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 4.0e-19 99.4 108 48.1
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 4.0e-19 99.4 135 43.7
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 2.0e-18 97.1 135 43.0
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 3.4e-18 96.3 130 40.0
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 4.4e-18 95.9 123 44.7
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 5.7e-18 95.5 199 36.2
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 5.7e-18 95.5 125 40.8
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 1.3e-17 94.4 121 44.6
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 1.3e-17 94.4 97 47.4
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 1.3e-17 94.4 125 44.0
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 1.7e-17 94.0 102 51.0
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 1.7e-17 94.0 96 53.1
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 2.2e-17 93.6 103 44.7
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 2.2e-17 93.6 120 43.3
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 3.7e-17 92.8 164 37.8
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 3.7e-17 92.8 103 44.7
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 5.4e-16 89.0 195 34.9
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 1.6e-15 87.4 143 38.5
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 3.5e-15 86.3 134 40.3
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 5.0e-14 82.4 136 38.2
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 8.6e-14 81.6 194 34.5
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 8.6e-14 81.6 106 41.5
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 8.6e-14 81.6 104 44.2
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 1.5e-13 80.9 195 34.4
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 1.5e-13 80.9 106 41.5
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 2.5e-13 80.1 126 37.3
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 7.2e-13 78.6 147 38.1
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 7.2e-13 78.6 98 48.0
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 9.5e-13 78.2 100 45.0
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 1.2e-12 77.8 143 35.0
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 4.0e-11 72.8 86 48.8
FvH4_3g08061 Fragaria vesca HOM05D007411 ORTHO05D009025 3.1e-08 63.2 71 43.7
Os01g0607100 Oryza sativa ssp. japonica HOM05D032292 ORTHO05D009025 9.2e-08 61.6 98 35.7
PSO724G0575 Papaver somniferum HOM05D007411 ORTHO05D009025 3.5e-07 59.7 104 33.7


User provided reference genes

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