Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 3.0e-82 308.5 162 100.0
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 6.6e-82 307.4 162 99.4
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 6.6e-82 307.4 162 99.4
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 8.1e-80 300.4 162 98.1
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 8.1e-80 300.4 162 98.1
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 1.5e-78 296.2 162 93.8
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 2.6e-78 295.4 164 97.0
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 3.8e-77 291.6 163 95.7
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 3.8e-77 291.6 163 95.7
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 3.8e-77 291.6 163 95.7
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 1.4e-76 289.7 163 95.1
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 1.4e-76 289.7 163 95.1
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 3.2e-76 288.5 163 94.5
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 3.2e-76 288.5 162 95.1
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 3.2e-76 288.5 163 94.5
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 3.2e-76 288.5 163 94.5
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 3.2e-76 288.5 162 95.1
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 3.5e-75 285.0 164 93.3
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 1.0e-74 283.5 163 90.8
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 1.0e-74 283.5 164 93.3
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 1.1e-73 280.0 163 91.4
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 3.6e-72 275.0 164 92.1
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 4.8e-72 274.6 163 88.3
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 4.6e-67 258.1 163 84.0
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 4.6e-67 258.1 163 84.7
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.9e-65 252.7 163 81.6
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 4.2e-60 235.0 164 76.8
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 1.1e-57 226.9 162 77.8
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 1.1e-57 226.9 165 76.4
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 2.0e-54 216.1 160 73.8
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 7.6e-54 214.2 163 73.6
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 1.0e-53 213.8 163 71.8
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 1.3e-53 213.4 164 70.1
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 3.8e-53 211.8 163 76.1
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 8.4e-53 210.7 163 73.0
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 4.2e-52 208.4 164 72.6
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 4.2e-52 208.4 165 69.1
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 4.2e-52 208.4 139 80.6
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 5.5e-52 208.0 166 68.7
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 7.2e-52 207.6 168 69.6
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 9.3e-52 207.2 166 66.9
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 9.3e-52 207.2 167 70.7
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 9.3e-52 207.2 160 72.5
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 1.2e-51 206.8 166 68.7
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 1.2e-51 206.8 164 68.3
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 2.1e-51 206.1 161 72.0
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.1e-51 206.1 160 71.9
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.1e-51 206.1 164 73.2
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 2.7e-51 205.7 163 69.9
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 3.5e-51 205.3 141 78.0
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 4.6e-51 204.9 161 69.6
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 4.6e-51 204.9 164 73.2
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 4.6e-51 204.9 168 67.9
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 4.6e-51 204.9 168 67.3
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 4.6e-51 204.9 159 71.7
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 4.6e-51 204.9 158 69.0
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 6.1e-51 204.5 159 72.3
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 7.9e-51 204.1 161 71.4
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 7.9e-51 204.1 160 71.9
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 7.9e-51 204.1 160 71.9
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 7.9e-51 204.1 166 69.9
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 1.3e-50 203.4 165 68.5
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 1.3e-50 203.4 141 76.6
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 1.3e-50 203.4 139 76.3
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 1.8e-50 203.0 162 71.0
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 1.8e-50 203.0 162 71.0
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 1.8e-50 203.0 159 71.7
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 2.3e-50 202.6 169 68.6
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 2.3e-50 202.6 158 70.3
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 3.0e-50 202.2 163 68.7
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 5.1e-50 201.4 164 65.2
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 6.7e-50 201.1 168 66.1
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 1.1e-49 200.3 168 67.3
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 1.1e-49 200.3 169 66.9
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 1.5e-49 199.9 165 66.7
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 1.5e-49 199.9 139 75.5
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 1.9e-49 199.5 140 76.4
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 3.3e-49 198.7 138 76.1
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 4.3e-49 198.4 164 69.5
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 5.7e-49 198.0 167 68.3
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 5.7e-49 198.0 138 76.1
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 9.7e-49 197.2 139 75.5
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 9.7e-49 197.2 165 67.3
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 9.7e-49 197.2 168 66.7
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 9.7e-49 197.2 138 74.6
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 1.3e-48 196.8 162 71.6
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 1.3e-48 196.8 139 76.3
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 4.8e-48 194.9 138 76.8
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 8.2e-48 194.1 155 70.3
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 1.1e-47 193.7 135 73.3
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.8e-47 193.0 147 72.8
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 2.4e-47 192.6 164 65.2
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 3.1e-47 192.2 100 94.0
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 4.1e-47 191.8 137 73.0
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 4.1e-47 191.8 138 73.2
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 5.3e-47 191.4 100 92.0
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 5.3e-47 191.4 100 92.0
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 6.9e-47 191.0 169 66.3
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 6.9e-47 191.0 141 72.3
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 1.2e-46 190.3 140 73.6
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 2.0e-46 189.5 138 73.2
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 2.0e-46 189.5 153 66.7
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 7.7e-46 187.6 142 72.5
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 7.7e-46 187.6 137 70.8
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 1.7e-45 186.4 127 77.2
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 2.2e-45 186.0 142 71.8
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 2.2e-45 186.0 144 65.3
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 2.9e-45 185.7 165 64.8
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 2.9e-45 185.7 108 84.3
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 6.5e-45 184.5 139 71.9
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 2.1e-43 179.5 146 64.4
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 2.3e-42 176.0 168 60.1
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 1.5e-38 163.3 139 64.7
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 2.9e-37 159.1 134 64.9
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 4.2e-36 155.2 131 67.9
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 1.4e-34 150.2 167 56.3
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 3.1e-31 139.0 97 68.0
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 4.5e-30 135.2 94 71.3
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 1.3e-29 133.7 135 49.6
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 1.1e-28 130.6 135 50.4
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 2.1e-27 126.3 137 51.8
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 3.0e-26 122.5 159 45.3
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 1.1e-23 114.0 72 77.8
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 8.0e-19 97.8 51 94.1
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 8.0e-19 97.8 51 94.1
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 8.0e-19 97.8 52 92.3
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 6.8e-18 94.7 90 52.2
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 4.4e-17 92.0 106 52.8
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 6.3e-16 88.2 101 50.5
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 1.2e-11 73.9 119 38.7


User provided reference genes

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