Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 5.8e-94 347.8 213 100.0
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 5.4e-92 341.3 213 94.8
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 6.9e-87 324.3 213 87.3
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 2.0e-86 322.8 185 90.3
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 2.1e-83 312.8 185 85.9
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.8e-82 309.7 162 95.7
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 7.4e-81 304.3 185 84.9
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.3e-80 303.5 185 84.9
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 2.8e-80 302.4 185 84.3
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.8e-80 302.4 186 86.0
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.3e-77 293.5 158 93.0
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 2.9e-77 292.4 185 83.2
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 3.5e-75 285.4 185 81.6
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 7.9e-75 284.3 147 96.6
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.4e-71 273.5 179 79.3
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 3.1e-71 272.3 145 93.1
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 2.2e-69 266.2 158 84.2
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 3.1e-63 245.7 183 69.9
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 3.1e-63 245.7 184 71.7
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 4.1e-63 245.4 185 69.2
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.0e-62 243.0 145 81.4
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 2.0e-62 243.0 185 67.6
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 4.5e-62 241.9 186 69.4
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 5.9e-62 241.5 185 69.7
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.3e-61 240.4 168 72.0
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.3e-61 240.4 145 80.7
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.3e-61 240.4 183 68.3
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 1.7e-61 240.0 185 69.2
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 3.8e-61 238.8 168 71.4
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 8.5e-61 237.7 160 75.6
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 8.5e-61 237.7 147 76.9
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.4e-60 236.9 187 67.4
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.9e-60 236.5 145 80.0
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.9e-60 236.5 183 65.6
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 3.2e-60 235.7 145 78.6
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 5.5e-60 235.0 145 80.0
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 5.5e-60 235.0 184 65.8
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 7.2e-60 234.6 162 72.8
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 7.2e-60 234.6 149 77.2
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 9.4e-60 234.2 190 64.2
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.2e-59 233.8 164 73.2
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.2e-59 233.8 156 75.0
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.2e-59 233.8 147 78.2
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.2e-59 233.8 145 75.9
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.6e-59 233.4 168 71.4
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.6e-59 233.4 145 77.9
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 2.1e-59 233.0 185 63.8
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.7e-59 232.6 147 75.5
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.6e-59 232.3 145 77.2
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 3.6e-59 232.3 145 78.6
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 4.7e-59 231.9 164 72.0
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.0e-58 230.7 198 61.6
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.0e-58 230.7 142 77.5
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.8e-58 229.9 185 65.9
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.3e-58 229.6 185 67.0
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 3.0e-58 229.2 147 73.5
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.0e-58 229.2 183 66.1
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.0e-58 229.2 183 66.1
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.9e-58 228.8 190 66.3
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 3.9e-58 228.8 185 65.9
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.9e-58 228.8 145 77.9
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 3.9e-58 228.8 163 71.8
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 5.1e-58 228.4 186 64.5
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.1e-57 227.3 165 70.3
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.1e-57 227.3 165 70.3
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.5e-57 226.9 146 77.4
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.5e-57 226.9 186 64.5
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 2.6e-57 226.1 148 75.7
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.6e-57 226.1 183 65.0
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 2.6e-57 226.1 167 71.3
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.3e-57 225.7 162 72.2
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.3e-57 225.7 179 64.8
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.4e-57 225.3 165 69.7
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 7.4e-57 224.6 178 65.2
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 9.7e-57 224.2 185 63.2
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 9.7e-57 224.2 147 74.8
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 9.7e-57 224.2 142 73.9
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 1.7e-56 223.4 196 60.7
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 3.7e-56 222.2 146 74.7
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 3.7e-56 222.2 146 74.7
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.7e-56 222.2 186 62.9
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 4.8e-56 221.9 188 64.4
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 6.3e-56 221.5 152 71.1
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 8.2e-56 221.1 147 72.8
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 8.2e-56 221.1 164 69.5
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.1e-55 220.7 181 61.9
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.1e-55 220.7 185 62.7
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.1e-55 220.7 155 71.6
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.1e-55 220.7 155 71.6
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.4e-55 220.3 191 62.3
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.4e-55 220.3 152 71.1
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.4e-55 220.3 145 73.8
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.4e-55 220.3 143 74.8
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.8e-55 219.9 191 62.3
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 1.8e-55 219.9 179 63.7
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.8e-55 219.9 145 73.1
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.8e-55 219.9 147 72.8
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 7.0e-55 218.0 187 59.9
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.6e-54 216.9 147 72.8
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.0e-54 216.5 187 63.6
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 3.5e-54 215.7 166 68.7
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 7.7e-54 214.5 145 72.4
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 7.7e-54 214.5 165 67.3
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.0e-53 214.2 172 62.8
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.7e-53 213.4 143 72.0
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 1.5e-52 210.3 157 68.8
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.5e-52 210.3 156 65.4
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-52 210.3 145 73.1
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 1.9e-52 209.9 139 80.6
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.5e-52 209.5 161 64.6
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.2e-51 207.2 145 70.3
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 2.7e-51 206.1 182 60.4
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.0e-50 204.1 194 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.4e-50 203.8 142 65.5
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 2.3e-50 203.0 139 73.4
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 2.3e-50 203.0 139 73.4
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 2.3e-50 203.0 139 73.4
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.3e-50 203.0 143 68.5
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.0e-50 202.2 145 64.8
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 8.8e-50 201.1 139 70.5
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 2.0e-49 199.9 164 59.1
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-49 199.9 139 71.9
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 5.7e-49 198.4 123 78.0
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 7.5e-49 198.0 194 55.2
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.4e-47 193.0 125 72.8
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 5.3e-47 191.8 134 70.1
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 5.3e-47 191.8 155 65.8
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 5.3e-47 191.8 155 65.8
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 9.1e-47 191.0 123 76.4
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.2e-46 190.7 163 58.3
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.6e-46 190.3 152 59.9
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 5.9e-46 188.3 184 54.9
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.7e-45 186.8 156 57.7
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 8.5e-45 184.5 151 62.9
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-44 183.7 155 63.2
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.2e-44 182.2 122 72.1
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.1e-43 179.9 145 61.4
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 8.0e-43 177.9 144 61.1
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 6.8e-42 174.9 152 59.2
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 6.8e-42 174.9 143 59.4
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 3.1e-39 166.0 146 61.6
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 7.0e-39 164.9 106 76.4
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.2e-38 164.1 132 63.6
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 5.9e-38 161.8 106 74.5
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.6e-35 153.7 96 72.9
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 2.0e-33 146.7 212 44.8
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 5.7e-33 145.2 101 65.3
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 3.7e-32 142.5 92 73.9
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 6.3e-32 141.7 89 76.4
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.4e-31 139.8 123 57.7
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.6e-30 137.1 82 80.5
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 1.4e-26 124.0 106 62.3
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 3.4e-25 119.4 158 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 3.5e-22 109.4 96 54.2
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 5.9e-22 108.6 140 40.7
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.5e-20 103.2 62 77.4
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-17 94.4 63 68.3
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.4e-15 87.4 181 32.6
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 5.0e-13 79.0 49 75.5
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.6e-11 73.9 77 51.9
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.2e-09 67.8 158 29.7
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.3e-08 64.3 53 62.3


User provided reference genes

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