Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p15600 Brassica napus HOM05D002144 ORTHO05D002170 1.3e-63 246.1 119 100.0
BolC6t36748H Brassica oleracea HOM05D002144 ORTHO05D002170 5.1e-63 244.2 119 99.2
BcaC08g44159 Brassica carinata HOM05D002144 ORTHO05D002170 7.3e-62 240.4 119 98.3
A05p17730 Brassica napus HOM05D002144 ORTHO05D002170 4.7e-61 237.7 119 96.6
BraA05t20665Z Brassica rapa HOM05D002144 ORTHO05D002170 4.7e-61 237.7 119 96.6
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 6.0e-48 194.1 129 79.8
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 1.0e-47 193.4 127 76.4
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 7.3e-46 187.2 128 75.0
BcaB02g10863 Brassica carinata HOM05D002144 ORTHO05D002170 1.2e-43 179.9 126 75.4
Sp1g40510 Schrenkiella parvula HOM05D001069 ORTHO05D002170 6.4e-42 174.1 119 76.5
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 2.4e-41 172.2 130 70.8
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 1.3e-39 166.4 130 70.8
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 2.1e-37 159.1 133 66.2
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 1.9e-33 146.0 122 63.9
A06p00580 Brassica napus HOM05D000815 ORTHO05D000636 3.9e-31 138.3 121 58.7
C06p09860 Brassica napus HOM05D000815 ORTHO05D000636 1.5e-30 136.3 114 61.4
BolC6t36057H Brassica oleracea HOM05D000815 ORTHO05D000636 1.5e-30 136.3 114 61.4
BraA06t23272Z Brassica rapa HOM05D000815 ORTHO05D000636 2.5e-30 135.6 115 60.0
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.8e-20 102.8 132 49.2
THA.LOC104822669 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 4.5e-19 98.2 127 50.4
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 1.0e-18 97.1 125 46.4
Sp3g12440 Schrenkiella parvula HOM05D002144 ORTHO05D002170 2.9e-18 95.5 123 49.6
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 4.2e-17 91.7 135 45.9
Gohir.D05G140350 Gossypium hirsutum HOM05D002144 ORTHO05D002170 3.6e-16 88.6 110 46.4
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 4.6e-16 88.2 131 41.2
AL3G26430 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 7.9e-16 87.4 119 47.9
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 1.0e-15 87.0 132 47.0
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 1.4e-15 86.7 128 43.8
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.4e-15 86.7 128 43.8
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.4e-15 86.7 131 45.0
A05p35280 Brassica napus HOM05D002144 ORTHO05D002170 1.8e-15 86.3 112 48.2
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 3.0e-15 85.5 88 55.7
BraA05t22338Z Brassica rapa HOM05D002144 ORTHO05D002170 8.8e-15 84.0 112 47.3
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 2.0e-14 82.8 122 42.6
A01p39510 Brassica napus HOM05D002144 ORTHO05D002170 3.3e-14 82.0 108 47.2
C05p53460 Brassica napus HOM05D002144 ORTHO05D002170 3.3e-14 82.0 112 44.6
BolC5t34023H Brassica oleracea HOM05D002144 ORTHO05D002170 3.3e-14 82.0 112 44.6
BraA01t03992Z Brassica rapa HOM05D002144 ORTHO05D002170 3.3e-14 82.0 108 47.2
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 3.3e-14 82.0 126 42.1
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 5.7e-14 81.3 130 41.5
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 7.4e-14 80.9 118 41.5
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 2.2e-13 79.3 125 39.2
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 3.7e-13 78.6 137 42.3
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 8.2e-13 77.4 122 38.5
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 1.1e-12 77.0 128 38.3
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 1.1e-12 77.0 138 39.1
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 1.1e-12 77.0 148 35.8
C01p50450 Brassica napus HOM05D002144 ORTHO05D002170 1.4e-12 76.6 108 45.4
BolC1t04997H Brassica oleracea HOM05D002144 ORTHO05D002170 1.4e-12 76.6 108 45.4
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 1.4e-12 76.6 137 42.3
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.8e-12 76.3 137 41.6
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 5.3e-12 74.7 139 40.3
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 9.1e-12 73.9 79 46.8
Carub.0003s1379 Capsella rubella HOM05D002144 ORTHO05D002170 1.5e-11 73.2 122 41.8
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 1.5e-11 73.2 143 38.5
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 4.5e-11 71.6 134 41.0
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 4.5e-11 71.6 130 40.8
CARHR089060 Cardamine hirsuta HOM05D002144 ORTHO05D002170 1.0e-10 70.5 119 39.5
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 1.0e-10 70.5 130 41.5
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 1.0e-10 70.5 143 36.4
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.7e-10 69.7 85 48.2
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 1.7e-10 69.7 136 37.5
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 2.2e-10 69.3 79 46.8
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 2.2e-10 69.3 131 39.7
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 3.8e-10 68.6 132 38.6
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 5.0e-10 68.2 128 39.1
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 8.5e-10 67.4 75 50.7
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 1.9e-09 66.2 123 35.8
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 1.9e-09 66.2 129 38.0
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 1.9e-09 66.2 142 38.7
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.9e-09 66.2 82 43.9
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 1.9e-09 66.2 79 48.1
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 1.9e-09 66.2 79 48.1
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 2.5e-09 65.9 101 44.6
Eucgr.J02610 Eucalyptus grandis HOM05D002144 ORTHO05D002170 3.2e-09 65.5 133 33.8
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 4.2e-09 65.1 84 47.6
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 4.2e-09 65.1 135 42.2
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 7.2e-09 64.3 84 46.4
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 7.2e-09 64.3 121 36.4
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 9.4e-09 63.9 127 35.4
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.6e-08 63.2 138 32.6
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.6e-08 63.2 82 45.1
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 1.6e-08 63.2 130 39.2
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 2.1e-08 62.8 88 44.3
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 2.7e-08 62.4 36 72.2
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 2.7e-08 62.4 51 54.9
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 4.7e-08 61.6 41 70.7
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 4.7e-08 61.6 133 33.1
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 4.7e-08 61.6 76 44.7
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 4.7e-08 61.6 43 65.1
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 4.7e-08 61.6 101 36.6
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 4.7e-08 61.6 41 73.2
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 4.7e-08 61.6 41 73.2
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 4.7e-08 61.6 41 73.2
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 6.1e-08 61.2 31 83.9
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 6.1e-08 61.2 45 62.2
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 7.9e-08 60.8 46 65.2
MELO3C022686.2 Cucumis melo HOM05D002144 ORTHO05D002170 7.9e-08 60.8 69 49.3
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 7.9e-08 60.8 42 64.3
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 7.9e-08 60.8 103 41.7
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 1.0e-07 60.5 35 71.4
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.0e-07 60.5 44 68.2
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 1.4e-07 60.1 37 73.0
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.8e-07 59.7 35 74.3
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.8e-07 59.7 120 35.0
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 1.8e-07 59.7 130 32.3
Aa31LG8G1430 Aethionema arabicum HOM05D002144 ORTHO05D002170 3.0e-07 58.9 76 48.7
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 3.0e-07 58.9 35 71.4
ClCG07G014400 Citrullus lanatus HOM05D002144 ORTHO05D002170 3.9e-07 58.5 74 43.2
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 3.9e-07 58.5 76 44.7
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 3.9e-07 58.5 48 60.4
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.7e-07 57.8 35 74.3
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.7e-07 57.8 35 74.3
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 6.7e-07 57.8 35 74.3
Lj5g0009461 Lotus japonicus HOM05D002144 ORTHO05D002170 6.7e-07 57.8 107 35.5
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 6.7e-07 57.8 121 31.4
Glyma.19G232400 Glycine max HOM05D002144 ORTHO05D002170 8.8e-07 57.4 89 39.3
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 8.8e-07 57.4 73 43.8
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 1.5e-06 56.6 125 35.2
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 1.5e-06 56.6 84 41.7
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 1.5e-06 56.6 129 33.3
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 1.5e-06 56.6 134 35.8
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 2.0e-06 56.2 35 68.6
arahy.Tifrunner.gnm1.ann1.FS7ZHJ Arachis hypogaea HOM05D002144 ORTHO05D002170 2.6e-06 55.8 89 37.1
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 2.6e-06 55.8 35 68.6
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 2.6e-06 55.8 125 35.2
unitig_0.g2318 Utricularia gibba HOM05D002144 ORTHO05D002170 2.6e-06 55.8 87 39.1
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 2.6e-06 55.8 75 45.3
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 3.3e-06 55.5 36 66.7
C09p02240 Brassica napus HOM05D002144 ORTHO05D002170 3.3e-06 55.5 95 38.9
CDE11G0597 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 3.3e-06 55.5 49 53.1
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 3.3e-06 55.5 123 35.0
Peaxi162Scf00471g00710 Petunia axillaris HOM05D002144 ORTHO05D002170 3.3e-06 55.5 83 44.6
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 3.3e-06 55.5 90 40.0
EL10Ac4g09903 Beta vulgaris HOM05D002144 ORTHO05D002170 4.4e-06 55.1 45 53.3
Glyma.03G234800 Glycine max HOM05D002144 ORTHO05D002170 4.4e-06 55.1 89 38.2
QL03p019949 Quercus lobata HOM05D002144 ORTHO05D002170 4.4e-06 55.1 92 39.1
BcaC03g16170 Brassica carinata HOM05D002144 ORTHO05D002170 5.7e-06 54.7 103 38.8
C02p39100 Brassica napus HOM05D002144 ORTHO05D002170 5.7e-06 54.7 103 38.8
Ciclev10002843m.g Citrus clementina HOM05D002144 ORTHO05D002170 5.7e-06 54.7 90 38.9
A02p24940 Brassica napus HOM05D002144 ORTHO05D002170 7.4e-06 54.3 100 39.0
BraA02t07484Z Brassica rapa HOM05D002144 ORTHO05D002170 7.4e-06 54.3 100 39.0
PSO729G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 7.4e-06 54.3 103 37.9
A09p02140 Brassica napus HOM05D002144 ORTHO05D002170 9.7e-06 53.9 93 37.6
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 9.7e-06 53.9 94 40.4
Lalb_Chr18g0045821 Lupinus albus HOM05D002144 ORTHO05D002170 9.7e-06 53.9 31 74.2
TPR.G33200 Trifolium pratense HOM05D002144 ORTHO05D002170 9.7e-06 53.9 89 37.1


User provided reference genes

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