Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 6.8e-75 283.9 140 100.0
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 6.8e-75 283.9 140 100.0
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 1.4e-67 259.6 140 90.7
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 1.4e-67 259.6 140 90.7
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 1.8e-67 259.2 140 90.7
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 3.1e-67 258.5 140 90.0
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 5.2e-67 257.7 140 90.0
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 1.5e-66 256.1 140 89.3
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 1.5e-66 256.1 140 89.3
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 2.6e-66 255.4 140 88.6
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 3.4e-66 255.0 140 89.3
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 3.4e-66 255.0 140 87.9
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.7e-65 252.7 140 87.9
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 3.7e-65 251.5 140 88.6
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 1.1e-64 250.0 140 87.1
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 1.2e-60 236.5 140 80.0
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 2.6e-58 228.8 140 78.6
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 7.5e-58 227.3 139 83.5
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 9.8e-58 226.9 140 82.1
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 9.8e-58 226.9 140 82.1
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.7e-54 216.1 139 72.7
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.7e-54 216.1 140 73.6
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 5.1e-54 214.5 140 72.9
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 5.1e-54 214.5 140 72.9
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 8.6e-54 213.8 139 72.7
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 4.3e-53 211.5 140 71.4
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 5.6e-53 211.1 140 72.9
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 7.3e-53 210.7 140 72.1
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 9.5e-53 210.3 140 71.4
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 2.1e-52 209.1 138 70.3
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 2.1e-52 209.1 139 70.5
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.8e-52 208.8 140 72.1
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 3.6e-52 208.4 140 69.3
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.7e-52 208.0 140 69.3
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 6.2e-52 207.6 140 68.6
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 8.1e-52 207.2 140 68.6
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 1.4e-51 206.5 139 70.5
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.3e-51 205.7 140 70.0
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.3e-51 205.7 140 70.0
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 2.3e-51 205.7 140 70.0
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 3.1e-51 205.3 139 70.5
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 3.1e-51 205.3 140 69.3
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 3.1e-51 205.3 139 68.3
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 4.0e-51 204.9 138 68.8
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 4.0e-51 204.9 140 68.6
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 2.0e-50 202.6 140 69.3
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 2.0e-50 202.6 140 67.9
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 2.0e-50 202.6 140 69.3
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 2.0e-50 202.6 140 69.3
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 2.6e-50 202.2 139 69.1
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 7.6e-50 200.7 140 67.1
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 7.6e-50 200.7 140 67.1
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 9.9e-50 200.3 140 67.1
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 9.9e-50 200.3 140 67.1
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.7e-49 199.5 138 71.7
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 2.9e-49 198.7 140 68.6
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 3.8e-49 198.4 140 67.1
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 4.9e-49 198.0 139 68.3
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 4.9e-49 198.0 139 68.3
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 4.9e-49 198.0 139 69.1
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 6.4e-49 197.6 139 68.3
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.1e-48 196.8 139 66.9
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.1e-48 196.8 139 66.9
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 1.4e-48 196.4 139 67.6
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.4e-48 196.4 145 66.2
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 1.4e-48 196.4 139 68.3
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.4e-48 195.7 139 67.6
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 3.2e-48 195.3 139 67.6
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 4.1e-48 194.9 140 68.6
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.1e-48 194.9 139 66.2
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 4.1e-48 194.9 140 66.4
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 5.4e-48 194.5 141 68.8
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 7.1e-48 194.1 139 66.2
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 7.1e-48 194.1 139 66.2
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.2e-47 193.4 139 67.6
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 2.7e-47 192.2 140 65.7
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 3.5e-47 191.8 140 65.0
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 3.5e-47 191.8 139 67.6
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 6.0e-47 191.0 140 64.3
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 5.1e-46 188.0 139 67.6
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 6.6e-46 187.6 139 64.0
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 2.5e-45 185.7 139 65.5
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 4.3e-45 184.9 139 66.2
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 5.6e-45 184.5 107 86.0
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 5.6e-45 184.5 139 66.9
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 7.3e-45 184.1 139 63.3
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 7.3e-45 184.1 135 65.2
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 1.2e-44 183.3 166 56.0
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 2.1e-44 182.6 140 63.6
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 2.8e-44 182.2 131 67.2
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 3.6e-44 181.8 139 65.5
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 8.1e-44 180.6 132 63.6
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 1.1e-43 180.3 139 65.5
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 6.9e-43 177.6 139 64.0
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 1.5e-42 176.4 140 60.7
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 3.4e-42 175.3 122 72.1
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 3.4e-42 175.3 140 62.9
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.3e-41 173.3 140 62.9
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 4.9e-41 171.4 140 59.3
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 6.4e-41 171.0 164 53.0
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 6.4e-41 171.0 140 59.3
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 2.4e-40 169.1 140 58.6
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 9.3e-40 167.2 113 69.0
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.6e-39 166.4 112 69.6
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.3e-36 156.8 139 55.4
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.3e-36 156.8 139 55.4
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.3e-36 156.8 113 65.5
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 5.8e-34 147.9 115 64.3
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 3.8e-33 145.2 113 59.3
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 6.4e-33 144.4 118 61.0
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 1.6e-28 129.8 92 65.2
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.8e-26 121.3 90 62.2
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 6.2e-20 101.3 132 35.6
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 1.4e-19 100.1 127 37.0
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 1.5e-18 96.7 131 37.4
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.3e-17 93.6 64 64.1
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 3.8e-17 92.0 62 72.6
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 2.5e-16 89.4 69 65.2
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 4.2e-16 88.6 63 68.3
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 3.5e-15 85.5 64 62.5
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 1.3e-14 83.6 82 46.3
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 8.7e-14 80.9 54 68.5
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 8.7e-14 80.9 51 70.6
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.6e-12 76.6 63 58.7
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 5.0e-09 65.1 57 59.6
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.5e-08 61.6 40 67.5
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 3.0e-06 55.8 72 34.7


User provided reference genes

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