Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 0.0e+00 1257.3 640 100.0
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 0.0e+00 1241.5 640 98.8
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 0.0e+00 1239.2 640 96.9
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 0.0e+00 1229.2 640 97.7
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 0.0e+00 1222.2 640 96.2
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 0.0e+00 1120.1 640 90.5
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 1.0e-266 923.3 653 74.1
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 1.2e-240 836.6 641 67.4
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 3.4e-214 748.8 639 63.2
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 3.0e-210 735.7 631 61.3
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 3.9e-210 735.3 604 63.4
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 6.4e-205 718.0 642 58.9
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 5.4e-204 714.9 642 59.2
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 1.9e-201 706.4 651 57.9
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 6.7e-162 575.1 561 59.2
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 5.0e-141 505.8 617 48.3
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 4.0e-138 496.1 337 75.1
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 2.2e-136 490.3 483 55.9
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 3.2e-135 486.5 563 52.9
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 4.9e-112 409.5 339 66.1
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 9.6e-100 368.6 572 40.2
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 2.3e-85 320.9 680 34.0
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 3.0e-85 320.5 182 85.2
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 7.4e-84 315.8 572 36.4
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.3e-83 315.1 579 37.5
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 1.1e-82 312.0 599 35.4
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 2.4e-82 310.8 600 36.3
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 5.3e-82 309.7 578 35.5
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 9.0e-82 308.9 627 35.7
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.5e-81 308.1 640 34.8
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 7.6e-81 305.8 654 33.8
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 7.6e-81 305.8 567 36.9
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.0e-80 305.4 567 36.7
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 1.0e-80 305.4 600 35.0
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 1.0e-80 305.4 638 34.3
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 4.9e-80 303.1 567 36.9
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 6.5e-80 302.8 677 33.4
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 1.9e-79 301.2 580 36.7
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 3.2e-79 300.4 599 34.9
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 9.3e-79 298.9 575 36.9
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 3.5e-78 297.0 616 34.7
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 4.6e-78 296.6 592 35.0
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 1.3e-77 295.0 634 36.0
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 1.8e-77 294.7 645 33.6
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 3.9e-77 293.5 618 34.3
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 9.6e-76 288.9 645 33.5
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 1.6e-75 288.1 585 35.4
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 2.8e-75 287.3 680 33.8
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 1.2e-73 282.0 616 34.7
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 2.6e-73 280.8 634 33.9
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 1.0e-72 278.9 663 31.2
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 2.2e-72 277.7 592 32.6
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 6.5e-72 276.2 664 32.5
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 5.5e-71 273.1 641 34.3
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 2.1e-70 271.2 641 34.3
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 4.6e-70 270.0 613 33.3
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 1.0e-69 268.9 572 33.2
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 1.0e-69 268.9 593 34.6
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 3.9e-69 266.9 578 34.4
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 6.7e-69 266.2 575 33.2
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.5e-68 264.2 593 32.2
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 4.3e-68 263.5 594 32.0
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 4.3e-68 263.5 691 31.8
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 5.7e-68 263.1 600 32.5
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 2.8e-67 260.8 620 32.4
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 3.7e-67 260.4 620 32.7
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.1e-66 258.8 599 32.1
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 1.4e-66 258.5 583 32.2
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 1.4e-66 258.5 584 33.4
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 1.2e-65 255.4 575 33.0
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 1.2e-65 255.4 686 30.5
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 5.9e-65 253.1 694 31.4
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.0e-64 252.3 569 32.9
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 1.3e-64 251.9 590 31.9
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 1.2e-62 245.4 604 30.8
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 1.6e-62 245.0 627 30.9
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 2.7e-62 244.2 604 30.8
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 3.6e-62 243.8 641 32.8
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 6.1e-62 243.0 619 30.4
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 7.9e-62 242.7 592 32.3
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 1.8e-61 241.5 575 32.9
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 3.9e-61 240.4 626 30.2
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 5.1e-61 240.0 630 30.5
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 7.4e-60 236.1 609 30.0
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 9.7e-60 235.7 565 30.6
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.8e-59 234.2 498 31.7
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 3.7e-59 233.8 552 32.1
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 6.9e-58 229.6 585 32.1
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 1.2e-57 228.8 732 27.3
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.7e-56 224.9 602 29.9
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 1.1e-55 222.2 585 30.1
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 9.1e-50 202.6 320 40.6
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 2.6e-49 201.1 555 28.8
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 3.5e-49 200.7 509 30.3
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.7e-48 198.4 643 29.7
A09p55300 Brassica napus HOM05D004843 ORTHO05D005833 3.8e-48 197.2 108 94.4
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 3.8e-48 197.2 271 43.9
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 1.9e-47 194.9 493 30.6
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 2.5e-47 194.5 610 27.9
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 2.5e-47 194.5 515 28.2
BraA09t38198Z Brassica rapa HOM05D004843 ORTHO05D005833 2.7e-46 191.0 108 93.5
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 4.4e-44 183.7 575 29.7
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 2.2e-43 181.4 423 31.7
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 1.8e-42 178.3 435 31.7
BcaB07g33349 Brassica carinata HOM05D004843 ORTHO05D005833 9.1e-42 176.0 160 59.4
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 3.5e-41 174.1 590 29.0
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 8.5e-40 169.5 448 31.5
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 8.5e-40 169.5 551 27.0
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 1.5e-39 168.7 236 40.7
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 1.9e-39 168.3 446 31.4
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 9.4e-39 166.0 557 25.7
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 2.3e-37 161.4 282 36.5
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 4.0e-37 160.6 249 40.6
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 2.6e-36 157.9 212 40.1
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 9.8e-36 156.0 547 26.5
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 1.1e-34 152.5 424 27.8
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 1.0e-32 146.0 403 28.5
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 5.0e-32 143.7 290 34.8
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 1.1e-31 142.5 363 31.4
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.1e-31 142.5 287 33.1
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 1.9e-31 141.7 437 27.7
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 6.1e-30 136.7 381 28.6
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 1.0e-24 119.4 176 37.5
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 2.9e-24 117.9 545 24.6
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 2.5e-23 114.8 174 36.8
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 2.5e-23 114.8 552 27.0
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 2.3e-21 108.2 154 37.7
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 5.7e-20 103.6 165 39.4
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 2.2e-19 101.7 141 45.4
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 8.3e-19 99.8 297 27.6
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 1.2e-17 95.9 414 23.9
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 3.3e-15 87.8 224 30.4
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 9.5e-15 86.3 155 38.7
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 5.2e-13 80.5 106 42.5
C06p08980 Brassica napus HOM05D004843 ORTHO05D005833 3.4e-12 77.8 103 42.7
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 3.2e-10 71.2 131 36.6
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 9.2e-10 69.7 439 21.2
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 6.0e-09 67.0 259 25.1
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 3.3e-07 61.2 367 21.8


User provided reference genes

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