Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p13880 Brassica napus HOM05D006735 ORTHO05D009558 4.5e-116 421.4 231 100.0
C03p21780 Brassica napus HOM05D006735 ORTHO05D009558 8.0e-81 304.3 186 92.5
C03p67160 Brassica napus HOM05D006735 ORTHO05D009558 1.1e-56 224.2 183 77.0
BcaC08g43985 Brassica carinata HOM05D006735 ORTHO05D009558 4.6e-52 208.8 125 97.6
BolC3t17400H Brassica oleracea HOM05D006735 ORTHO05D009558 2.5e-50 203.0 286 51.4
BcaC01g03559 Brassica carinata HOM05D006735 ORTHO05D009558 1.7e-46 190.3 121 93.4
BcaB01g02897 Brassica carinata HOM05D006735 ORTHO05D009558 2.5e-42 176.4 137 79.6
BolC3t18997H Brassica oleracea HOM05D006735 ORTHO05D009558 4.0e-40 169.1 109 91.7
BcaC03g18043 Brassica carinata HOM05D006735 ORTHO05D009558 7.3e-34 148.3 125 69.6
BcaC01g02272 Brassica carinata HOM05D006735 ORTHO05D009558 1.2e-28 131.0 125 72.8
BraA04t17554Z Brassica rapa HOM05D002011 ORTHO05D001948 2.9e-22 109.8 57 96.5
BcaC02g08361 Brassica carinata HOM05D002011 ORTHO05D001948 6.4e-22 108.6 57 94.7
BcaNung06960 Brassica carinata HOM05D002011 ORTHO05D001948 6.4e-22 108.6 57 94.7
A04p19630 Brassica napus HOM05D002011 ORTHO05D001948 6.4e-22 108.6 57 94.7
C04p55210 Brassica napus HOM05D002011 ORTHO05D001948 6.4e-22 108.6 57 94.7
BolC4t27060H Brassica oleracea HOM05D002011 ORTHO05D001948 4.2e-21 105.9 57 93.0
BcaB06g28049 Brassica carinata HOM05D002011 ORTHO05D001948 1.9e-18 97.1 57 84.2
A09p42550 Brassica napus HOM05D006735 ORTHO05D009558 6.2e-17 92.0 125 49.6
BcaC03g15864 Brassica carinata HOM05D006735 ORTHO05D009558 9.0e-16 88.2 133 44.4
BcaC04g20691 Brassica carinata HOM05D006735 ORTHO05D009558 1.2e-15 87.8 130 47.7
BcaC08g45821 Brassica carinata HOM05D006735 ORTHO05D009558 1.2e-15 87.8 136 44.9
C09p40570 Brassica napus HOM05D006735 ORTHO05D009558 1.2e-15 87.8 130 47.7
C04p61000 Brassica napus HOM05D006735 ORTHO05D009558 2.6e-15 86.7 130 47.7
BcaC09g51566 Brassica carinata HOM05D006735 ORTHO05D009558 4.5e-15 85.9 138 42.8
BcaC01g00870 Brassica carinata HOM05D006735 ORTHO05D009558 1.7e-14 84.0 142 43.0
BcaC09g51945 Brassica carinata HOM05D006735 ORTHO05D009558 2.9e-14 83.2 136 42.6
BcaC07g38146 Brassica carinata HOM05D006735 ORTHO05D009558 3.8e-14 82.8 142 42.3
C03p85420 Brassica napus HOM05D006735 ORTHO05D009558 4.9e-14 82.4 142 42.3
C01p49010 Brassica napus HOM05D006735 ORTHO05D000586 6.5e-14 82.0 132 44.7
C04p69030 Brassica napus HOM05D006735 ORTHO05D009558 6.5e-14 82.0 142 40.1
A01p26730 Brassica napus HOM05D006735 ORTHO05D009558 1.6e-12 77.4 153 40.5
Thhalv10000568m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 1.6e-12 77.4 57 71.9
Sp4g04360 Schrenkiella parvula HOM05D002011 ORTHO05D001948 7.9e-12 75.1 59 69.5
BcaC09g48693 Brassica carinata HOM05D006735 ORTHO05D009558 3.9e-11 72.8 136 41.9
A08p25190 Brassica napus HOM05D006735 ORTHO05D009558 3.3e-10 69.7 128 41.4
Sp7g29830 Schrenkiella parvula HOM05D002011 ORTHO05D001948 4.3e-10 69.3 83 53.0
C09p22370 Brassica napus HOM05D006735 ORTHO05D009558 7.4e-10 68.6 128 41.4
C09p53130 Brassica napus HOM05D006735 ORTHO05D009558 1.3e-09 67.8 128 42.2
BolC9t58189H Brassica oleracea HOM05D006735 ORTHO05D009558 1.3e-09 67.8 128 42.2
CARHR239930 Cardamine hirsuta HOM05D002011 ORTHO05D001948 1.3e-09 67.8 68 57.4
BcaNung03130 Brassica carinata HOM05D002011 ORTHO05D001948 1.6e-09 67.4 55 61.8
CARHR116290 Cardamine hirsuta HOM05D002011 ORTHO05D001948 1.6e-09 67.4 57 64.9
CARHR117250 Cardamine hirsuta HOM05D000477 ORTHO05D000338 2.8e-09 66.6 54 59.3
A01p06260 Brassica napus HOM05D002011 ORTHO05D001948 3.7e-09 66.2 70 51.4
A07p02010 Brassica napus HOM05D006735 ORTHO05D009558 4.8e-09 65.9 127 40.9
Thhalv10025671m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 2.4e-08 63.5 68 54.4
BcaC09g51992 Brassica carinata HOM05D002011 ORTHO05D001948 3.1e-08 63.2 52 61.5
C01p06900 Brassica napus HOM05D002011 ORTHO05D001948 3.1e-08 63.2 52 61.5
BolC1t00687H Brassica oleracea HOM05D002011 ORTHO05D001948 3.1e-08 63.2 52 61.5
AL7G19860 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 5.3e-08 62.4 50 64.0
BraA01t00593Z Brassica rapa HOM05D002011 ORTHO05D001948 9.0e-08 61.6 52 59.6
Carub.0007s0852 Capsella rubella HOM05D002011 ORTHO05D001948 9.0e-08 61.6 71 47.9
Prupe.1G486600 Prunus persica HOM05D002011 ORTHO05D001948 9.0e-08 61.6 75 46.7
A03p61210 Brassica napus HOM05D002011 ORTHO05D001948 1.5e-07 60.8 50 62.0
C07p59060 Brassica napus HOM05D002011 ORTHO05D001948 1.5e-07 60.8 47 63.8
BolC7t46354H Brassica oleracea HOM05D002011 ORTHO05D001948 1.5e-07 60.8 47 63.8
C02p38090 Brassica napus HOM05D006735 ORTHO05D009558 2.0e-07 60.5 126 40.5
C03p71260 Brassica napus HOM05D006735 ORTHO05D009558 2.6e-07 60.1 126 40.5
C06p04290 Brassica napus HOM05D006735 ORTHO05D009558 2.6e-07 60.1 126 40.5
A10p02300 Brassica napus HOM05D006735 ORTHO05D009558 4.5e-07 59.3 126 39.7
C03p17760 Brassica napus HOM05D006735 ORTHO05D009558 4.5e-07 59.3 141 34.0
BraA08t33793Z Brassica rapa HOM05D002011 ORTHO05D001948 4.5e-07 59.3 50 58.0
A08p18360 Brassica napus HOM05D002011 ORTHO05D001948 5.9e-07 58.9 63 52.4
AT4G32030 Arabidopsis thaliana HOM05D002011 ORTHO05D001948 7.7e-07 58.5 50 62.0
BcaB03g12730 Brassica carinata HOM05D002011 ORTHO05D001948 7.7e-07 58.5 50 60.0
BcaC01g01041 Brassica carinata HOM05D002011 ORTHO05D001948 1.0e-06 58.2 63 50.8
BolC3t21060H Brassica oleracea HOM05D002011 ORTHO05D001948 1.0e-06 58.2 63 50.8
Actinidia23086 Actinidia chinensis HOM05D002011 ORTHO05D001948 1.3e-06 57.8 49 61.2
C06p06100 Brassica napus HOM05D006735 ORTHO05D009558 1.3e-06 57.8 126 38.9
BraA03t15165Z Brassica rapa HOM05D002011 ORTHO05D001948 2.2e-06 57.0 64 51.6
Dinv18151 Davidia involucrata HOM05D002011 ORTHO05D001948 2.9e-06 56.6 59 57.6
Gohir.D07G034500 Gossypium hirsutum HOM05D002011 ORTHO05D001948 2.9e-06 56.6 51 54.9
Sed0017330 Sechium edule HOM05D002011 ORTHO05D001948 2.9e-06 56.6 61 49.2
C03p60980 Brassica napus HOM05D006735 ORTHO05D009558 3.8e-06 56.2 133 37.6
Lsat_1_v5_gn_6_115360 Lactuca sativa HOM05D002011 ORTHO05D001948 3.8e-06 56.2 51 54.9
Thecc.09G019200 Theobroma cacao HOM05D002011 ORTHO05D001948 3.8e-06 56.2 51 56.9
C08p49000 Brassica napus HOM05D006735 ORTHO05D009558 5.0e-06 55.8 126 35.7
CSS0035080 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 6.5e-06 55.5 47 61.7
CSS0039956 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 6.5e-06 55.5 46 58.7
CsaV3_2G032320 Cucumis sativus L. HOM05D002011 ORTHO05D001948 6.5e-06 55.5 63 46.0
Gohir.A07G030600 Gossypium hirsutum HOM05D002011 ORTHO05D001948 6.5e-06 55.5 51 54.9
Gorai.001G036200 Gossypium raimondii HOM05D002011 ORTHO05D001948 6.5e-06 55.5 51 54.9
TWI34G1253 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 6.5e-06 55.5 52 55.8
vmacro11223 Vaccinium macrocarpon HOM05D002011 ORTHO05D001948 6.5e-06 55.5 50 56.0
Atru.chr7.2505 Acer truncatum HOM05D002011 ORTHO05D001948 8.5e-06 55.1 53 56.6
C01p27580 Brassica napus HOM05D006735 ORTHO05D009558 8.5e-06 55.1 126 38.9


User provided reference genes

Program Settings