Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p13840 Brassica napus HOM05D001233 ORTHO05D013029 3.7e-92 341.7 189 100.0
C01p25490 Brassica napus HOM05D001233 ORTHO05D013029 6.5e-89 330.9 188 93.1
BcaC08g43981 Brassica carinata HOM05D001233 ORTHO05D013029 5.4e-43 178.3 104 100.0
C03p40400 Brassica napus HOM05D001233 ORTHO05D013029 3.0e-41 172.6 108 88.9
BcaC01g04418 Brassica carinata HOM05D001233 ORTHO05D013029 3.3e-40 169.1 104 90.4
C05p18420 Brassica napus HOM05D001233 ORTHO05D013029 1.4e-38 163.7 105 78.1
BolC5t30551H Brassica oleracea HOM05D001233 ORTHO05D013029 1.2e-37 160.6 107 78.5
BolC5t31741H Brassica oleracea HOM05D001233 ORTHO05D013029 2.9e-36 156.0 103 77.7
C05p30050 Brassica napus HOM05D001233 ORTHO05D013029 4.2e-35 152.1 103 76.7
BraA04t16775Z Brassica rapa HOM05D001233 ORTHO05D013029 2.5e-32 142.9 89 89.9
BolC6t36560H Brassica oleracea HOM05D001233 ORTHO05D013029 1.4e-30 137.1 84 98.8
C07p43150 Brassica napus HOM05D001233 ORTHO05D013029 9.0e-30 134.4 84 96.4
BolC3t16305H Brassica oleracea HOM05D001233 ORTHO05D013029 2.0e-29 133.3 84 83.3
BolC7t44841H Brassica oleracea HOM05D001233 ORTHO05D013029 3.5e-26 122.5 79 93.7
BcaNung02012 Brassica carinata HOM05D001233 ORTHO05D013029 7.9e-26 121.3 78 93.6
BcaC05g27122 Brassica carinata HOM05D001233 ORTHO05D013029 9.6e-24 114.4 81 72.8
BraA05t21562Z Brassica rapa HOM05D001233 ORTHO05D013029 1.6e-15 87.0 42 95.2
A05p26830 Brassica napus HOM05D001233 ORTHO05D013029 9.0e-14 81.3 40 97.5
BraA05t21561Z Brassica rapa HOM05D001233 ORTHO05D013029 9.0e-14 81.3 40 97.5
BcaC05g28731 Brassica carinata HOM05D001233 ORTHO05D001233 2.6e-13 79.7 103 47.6
A05p31850 Brassica napus HOM05D001233 ORTHO05D001233 2.6e-13 79.7 102 48.0
AT3G17940 Arabidopsis thaliana HOM05D001233 ORTHO05D001233 7.6e-13 78.2 72 56.9
A03p65520 Brassica napus HOM05D001233 ORTHO05D032176 1.0e-12 77.8 61 65.6
BraA05t22017Z Brassica rapa HOM05D001233 ORTHO05D001233 1.0e-12 77.8 102 47.1
BcaB06g25862 Brassica carinata HOM05D001233 ORTHO05D001233 1.3e-12 77.4 103 46.6
C05p48340 Brassica napus HOM05D001233 ORTHO05D001233 1.3e-12 77.4 102 47.1
BolC5t33568H Brassica oleracea HOM05D001233 ORTHO05D001233 1.3e-12 77.4 102 47.1
GSVIVG01008450001 Vitis vinifera HOM05D001233 ORTHO05D001233 1.3e-12 77.4 99 46.5
AL3G31110 Arabidopsis lyrata HOM05D001233 ORTHO05D001233 2.9e-12 76.3 72 55.6
Thhalv10021070m.g Eutrema salsugineum HOM05D001233 ORTHO05D001233 3.8e-12 75.9 72 55.6
BraA01t03710Z Brassica rapa HOM05D001233 ORTHO05D001233 8.4e-12 74.7 72 54.2
CSS0006371 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 8.4e-12 74.7 99 44.4
CSS0029153 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 8.4e-12 74.7 99 44.4
Sp3g16070 Schrenkiella parvula HOM05D001233 ORTHO05D001233 1.1e-11 74.3 72 54.2
Thecc.03G055200 Theobroma cacao HOM05D001233 ORTHO05D001233 1.4e-11 73.9 107 43.9
Cpa.g.sc3.391 Carica papaya HOM05D001233 ORTHO05D001233 1.9e-11 73.6 99 44.4
BcaB04g20804 Brassica carinata HOM05D001233 ORTHO05D001233 2.5e-11 73.2 72 52.8
Atru.chr9.1677 Acer truncatum HOM05D001233 ORTHO05D001233 3.2e-11 72.8 99 43.4
Atru.chr9.1711 Acer truncatum HOM05D001233 ORTHO05D001233 3.2e-11 72.8 99 43.4
CARHR093270 Cardamine hirsuta HOM05D001233 ORTHO05D001233 3.2e-11 72.8 72 54.2
AUR62032311 Chenopodium quinoa HOM05D001233 ORTHO05D001233 3.2e-11 72.8 145 36.6
Carub.0003s1767 Capsella rubella HOM05D001233 ORTHO05D001233 5.5e-11 72.0 72 54.2
CiPaw.15G143900 Carya illinoinensis HOM05D001233 ORTHO05D001233 5.5e-11 72.0 99 42.4
AUR62018107 Chenopodium quinoa HOM05D001233 ORTHO05D001233 5.5e-11 72.0 97 42.3
Nn3g18297 Nelumbo nucifera HOM05D001233 ORTHO05D001233 5.5e-11 72.0 99 42.4
Ciclev10008981m.g Citrus clementina HOM05D001233 ORTHO05D001233 7.1e-11 71.6 72 54.2
Haze_18873 Corylus avellana HOM05D001233 ORTHO05D001233 7.1e-11 71.6 72 52.8
MBI12_g36339_MAGBIO Magnolia biondii HOM05D001233 ORTHO05D001233 7.1e-11 71.6 103 39.8
RcHm_v2.0_Chr7g0178251 Rosa chinensis HOM05D001233 ORTHO05D001233 7.1e-11 71.6 72 51.4
DCAR_028347 Daucus carota HOM05D001233 ORTHO05D001233 9.3e-11 71.2 141 36.2
Os10g0155500 Oryza sativa ssp. japonica HOM05D001233 ORTHO05D001233 9.3e-11 71.2 144 34.7
TWI60G1513 Tripterygium wilfordii HOM05D001233 ORTHO05D001233 9.3e-11 71.2 98 40.8
BcaC09g48757 Brassica carinata HOM05D001233 ORTHO05D001233 1.2e-10 70.9 72 51.4
C01p46220 Brassica napus HOM05D001233 ORTHO05D001233 1.2e-10 70.9 72 51.4
BolC1t04583H Brassica oleracea HOM05D001233 ORTHO05D001233 1.2e-10 70.9 72 51.4
Eucgr.B00995 Eucalyptus grandis HOM05D001233 ORTHO05D001233 1.2e-10 70.9 99 42.4
FAN08G3202 Fragaria x ananassa HOM05D001233 ORTHO05D001233 1.2e-10 70.9 72 51.4
FAN13G0800 Fragaria x ananassa HOM05D001233 ORTHO05D001233 1.2e-10 70.9 72 51.4
Lj5A158T78 Lonicera japonica HOM05D001233 ORTHO05D001233 1.2e-10 70.9 72 52.8
Manes.01G118100 Manihot esculenta HOM05D001233 ORTHO05D001233 1.2e-10 70.9 145 33.1
Hund02844 Selenicereus undatus HOM05D001233 ORTHO05D001233 1.2e-10 70.9 72 51.4
MSTRG.9307 Avicennia marina HOM05D001233 ORTHO05D001233 1.6e-10 70.5 141 36.2
Duzib205G0743 Durio zibethinus HOM05D001233 ORTHO05D001233 1.6e-10 70.5 72 52.8
Nn4g24259 Nelumbo nucifera HOM05D001233 ORTHO05D001233 2.1e-10 70.1 141 34.0
MD06G1227800 Malus domestica HOM05D001233 ORTHO05D001233 3.5e-10 69.3 98 40.8
Oeu061238.1 Olea europaea HOM05D001233 ORTHO05D001233 3.5e-10 69.3 140 35.7
THA.LOC104820346 Tarenaya hassleriana HOM05D001233 ORTHO05D001233 3.5e-10 69.3 107 41.1
ClCG06G014260 Citrullus lanatus HOM05D001233 ORTHO05D001233 4.6e-10 68.9 72 52.8
MELO3C017363.2 Cucumis melo HOM05D001233 ORTHO05D001233 4.6e-10 68.9 72 50.0
CsaV3_1G004410 Cucumis sativus L. HOM05D001233 ORTHO05D001233 4.6e-10 68.9 72 50.0
Manes.14G171800 Manihot esculenta HOM05D001233 ORTHO05D001233 4.6e-10 68.9 99 39.4
PSO675G6450 Papaver somniferum HOM05D001233 ORTHO05D001233 4.6e-10 68.9 113 38.9
SalBow1G7573 Salvia bowleyana HOM05D001233 ORTHO05D001233 4.6e-10 68.9 72 51.4
FAN04G1457 Fragaria x ananassa HOM05D001233 ORTHO05D001233 6.1e-10 68.6 72 50.0
Aqoxy3G04086 Aquilegia oxysepala HOM05D001233 ORTHO05D001233 7.9e-10 68.2 72 47.2
FvH4_5g17440 Fragaria vesca HOM05D001233 ORTHO05D001233 7.9e-10 68.2 72 50.0
FAN18G3927 Fragaria x ananassa HOM05D001233 ORTHO05D001233 7.9e-10 68.2 72 50.0
Sed0023736 Sechium edule HOM05D001233 ORTHO05D001233 1.0e-09 67.8 72 50.0
Dinv19034 Davidia involucrata HOM05D001233 ORTHO05D001233 1.3e-09 67.4 72 48.6
Oeu031765.1 Olea europaea HOM05D001233 ORTHO05D001233 1.3e-09 67.4 72 50.0
Hund09517 Selenicereus undatus HOM05D001233 ORTHO05D001233 1.3e-09 67.4 97 40.2
Zm00001eb064300 Zea mays HOM05D001233 ORTHO05D001233 1.3e-09 67.4 145 33.1
Hma1.2p1_0158F.1_g070220 Hydrangea macrophylla HOM05D001233 ORTHO05D001233 1.8e-09 67.0 72 56.9
Ca_25337_v3 Cicer arietinum L. HOM05D001233 ORTHO05D001233 2.3e-09 66.6 107 37.4
Ca_29639_v3 Cicer arietinum L. HOM05D001233 ORTHO05D001233 2.3e-09 66.6 107 37.4
Sabra12G0032100 Salix brachista HOM05D001233 ORTHO05D001233 2.3e-09 66.6 112 36.6
Ciclev10012137m.g Citrus clementina HOM05D001233 ORTHO05D001233 3.0e-09 66.2 128 36.7
Gohir.D02G121600 Gossypium hirsutum HOM05D001233 ORTHO05D001233 3.0e-09 66.2 72 50.0
Gorai.005G132500 Gossypium raimondii HOM05D001233 ORTHO05D001233 3.0e-09 66.2 72 50.0
Potri.012G045875 Populus trichocarpa HOM05D001233 ORTHO05D001233 3.0e-09 66.2 71 47.9
Prupe.5G234200 Prunus persica HOM05D001233 ORTHO05D001233 3.0e-09 66.2 72 47.2
arahy.Tifrunner.gnm1.ann1.95KH60 Arachis hypogaea HOM05D001233 ORTHO05D001233 3.9e-09 65.9 107 38.3
arahy.Tifrunner.gnm1.ann1.B84EEW Arachis hypogaea HOM05D001233 ORTHO05D001233 3.9e-09 65.9 107 38.3
EL10Ac5g10524 Beta vulgaris HOM05D001233 ORTHO05D001233 3.9e-09 65.9 72 48.6
Dinv08204 Davidia involucrata HOM05D001233 ORTHO05D001233 3.9e-09 65.9 99 40.4
Atru.chr1.1902 Acer truncatum HOM05D001233 ORTHO05D001233 6.7e-09 65.1 143 35.7
AUR62011992 Chenopodium quinoa HOM05D001233 ORTHO05D001233 6.7e-09 65.1 72 50.0
COL.COLO4_04911 Corchorus olitorius HOM05D001233 ORTHO05D001233 6.7e-09 65.1 107 40.2
PSO541G6516 Papaver somniferum HOM05D001233 ORTHO05D001233 6.7e-09 65.1 113 38.9
CANSAT80G1969 Cannabis sativa HOM05D001233 ORTHO05D001233 8.7e-09 64.7 70 50.0
Cc04_g06190 Coffea canephora HOM05D001233 ORTHO05D001233 8.7e-09 64.7 72 44.4
Ah.11g050370 Amaranthus hybridus HOM05D001233 ORTHO05D001233 1.1e-08 64.3 71 47.9
Migut.O00772 Erythranthe guttata HOM05D001233 ORTHO05D001233 1.1e-08 64.3 72 50.0
TAR622G1286 Trochodendron aralioides HOM05D001233 ORTHO05D001233 1.1e-08 64.3 72 45.8
Peaxi162Scf00314g00323 Petunia axillaris HOM05D001233 ORTHO05D001233 1.5e-08 63.9 72 45.8
Sc05g0001190 Simmondsia chinensis HOM05D001233 ORTHO05D001233 1.5e-08 63.9 107 38.3
ATR0564G286 Amborella trichopoda HOM05D001233 ORTHO05D001233 1.9e-08 63.5 141 31.2
Gohir.A03G092700 Gossypium hirsutum HOM05D001233 ORTHO05D001233 1.9e-08 63.5 72 48.6
MD14G1236900 Malus domestica HOM05D001233 ORTHO05D001233 1.9e-08 63.5 98 38.8
HanXRQChr14g0433261 Helianthus annuus HOM05D001233 ORTHO05D001233 2.5e-08 63.2 126 34.9
TAR629G0043 Trochodendron aralioides HOM05D001233 ORTHO05D001233 2.5e-08 63.2 96 38.5
ECA238G3057 Erigeron canadensis HOM05D001233 ORTHO05D001233 3.3e-08 62.8 139 32.4
Sabra17G0107700 Salix brachista HOM05D001233 ORTHO05D001233 3.3e-08 62.8 107 39.3
PGR083G1970 Punica granatum HOM05D001233 ORTHO05D001233 4.3e-08 62.4 72 47.2
Solyc03g118650.3 Solanum lycopersicum HOM05D001233 ORTHO05D001233 4.3e-08 62.4 72 45.8
Sopen03g037610 Solanum pennellii HOM05D001233 ORTHO05D001233 4.3e-08 62.4 72 45.8
PGSC0003DMG400005754 Solanum tuberosum HOM05D001233 ORTHO05D001233 4.3e-08 62.4 72 45.8
vmacro17773 Vaccinium macrocarpon HOM05D001233 ORTHO05D001233 4.3e-08 62.4 106 38.7
Nitab4.5_0012026g0020 Nicotiana tabacum HOM05D001233 ORTHO05D001233 5.7e-08 62.0 72 45.8
Rhsim08G0127100 Rhododendron simsii HOM05D001233 ORTHO05D001233 5.7e-08 62.0 72 48.6
Sopen08g012510 Solanum pennellii HOM05D001233 ORTHO05D001233 7.4e-08 61.6 72 45.8
Lj2g0002731 Lotus japonicus HOM05D001233 ORTHO05D001233 1.3e-07 60.8 107 46.7
QL10p030255 Quercus lobata HOM05D001233 ORTHO05D001233 1.3e-07 60.8 99 41.4
Aa31LG8G4810 Aethionema arabicum HOM05D001233 ORTHO05D001233 1.6e-07 60.5 73 50.7
Lsat_1_v5_gn_2_11861 Lactuca sativa HOM05D001233 ORTHO05D001233 1.6e-07 60.5 140 32.9
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 2.2e-07 60.1 71 45.1
Migut.D01501 Erythranthe guttata HOM05D001233 ORTHO05D001233 2.2e-07 60.1 141 33.3
Nitab4.5_0013135g0020 Nicotiana tabacum HOM05D001233 ORTHO05D001233 2.2e-07 60.1 71 45.1
Phvul.004G150200 Phaseolus vulgaris HOM05D001233 ORTHO05D001233 2.2e-07 60.1 107 43.9
QL10p029836 Quercus lobata HOM05D001233 ORTHO05D001233 2.2e-07 60.1 72 50.0
Glyma.07G102900 Glycine max HOM05D001233 ORTHO05D001233 2.8e-07 59.7 72 43.1
SGA_v2.0_scaffold124G33647 Striga asiatica HOM05D001233 ORTHO05D001233 2.8e-07 59.7 141 33.3
unitig_27.g24922 Utricularia gibba HOM05D001233 ORTHO05D001233 8.2e-07 58.2 71 45.1
VMungo0464G1448 Vigna mungo HOM05D001233 ORTHO05D001233 1.1e-06 57.8 107 34.6
Potri.017G129300 Populus trichocarpa HOM05D001233 ORTHO05D001233 1.4e-06 57.4 145 32.4
CAN.G843.51 Capsicum annuum HOM05D001233 ORTHO05D001233 1.8e-06 57.0 71 40.8
Glyma.U031515 Glycine max HOM05D001233 ORTHO05D001233 1.8e-06 57.0 72 40.3
Psat1g030840 Pisum sativum HOM05D001233 ORTHO05D001233 1.8e-06 57.0 107 34.6
TPR.G8648 Trifolium pratense HOM05D001233 ORTHO05D001233 1.8e-06 57.0 97 35.1
AagrBONN_evm.TU.Sc2ySwM_344.5283 Anthoceros agrestis HOM05D001233 ORTHO05D001233 3.1e-06 56.2 122 31.1
Medtr6g069630 Medicago truncatula HOM05D001233 ORTHO05D001233 4.1e-06 55.8 72 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3114 Anthoceros agrestis HOM05D001233 ORTHO05D001233 5.3e-06 55.5 122 30.3
QL10p016156 Quercus lobata HOM05D001233 ORTHO05D001233 5.3e-06 55.5 70 40.0
QL93p0043_0009 Quercus lobata HOM05D001233 ORTHO05D001233 5.3e-06 55.5 70 40.0
Lalb_Chr24g0398161 Lupinus albus HOM05D001233 ORTHO05D001233 6.9e-06 55.1 72 43.1
Lalb_Chr14g0370601 Lupinus albus HOM05D001233 ORTHO05D001233 9.0e-06 54.7 107 34.6
HPP92_010104 Vanilla planifolia HOM05D001233 ORTHO05D001233 9.0e-06 54.7 72 41.7


User provided reference genes

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