Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p13650 Brassica napus HOM05D001367 ORTHO05D027497 1.5e-52 209.1 100 100.0
BolC6t36535H Brassica oleracea HOM05D001367 ORTHO05D027497 6.4e-27 124.0 61 98.4
C06p40170 Brassica napus HOM05D001367 ORTHO05D027497 4.6e-17 91.3 53 86.8
BcaB03g12408 Brassica carinata HOM05D001367 ORTHO05D027497 3.1e-13 78.6 48 83.3
A02p44550 Brassica napus HOM05D001367 ORTHO05D005289 1.2e-12 76.6 44 86.4
BraA02t09371Z Brassica rapa HOM05D001367 ORTHO05D005289 1.2e-12 76.6 44 86.4
BcaC03g18416 Brassica carinata HOM05D001367 ORTHO05D005289 3.4e-12 75.1 44 84.1
BcaC03g18422 Brassica carinata HOM05D001367 ORTHO05D005289 3.4e-12 75.1 44 84.1
BolC2t12553H Brassica oleracea HOM05D001367 ORTHO05D005289 3.4e-12 75.1 44 84.1
AT5G66380 Arabidopsis thaliana HOM05D001367 ORTHO05D005289 4.5e-12 74.7 44 81.8
C02p64950 Brassica napus HOM05D001367 ORTHO05D005289 4.5e-12 74.7 44 81.8
Carub.0008s2813 Capsella rubella HOM05D001367 ORTHO05D005289 4.5e-12 74.7 44 81.8
BcaNung04506 Brassica carinata HOM05D001367 ORTHO05D005289 5.8e-12 74.3 44 84.1
BcaNung05280 Brassica carinata HOM05D001367 ORTHO05D005289 5.8e-12 74.3 44 84.1
A09p10060 Brassica napus HOM05D001367 ORTHO05D005289 5.8e-12 74.3 44 84.1
C09p11920 Brassica napus HOM05D001367 ORTHO05D005289 5.8e-12 74.3 44 84.1
BolC9t54080H Brassica oleracea HOM05D001367 ORTHO05D005289 5.8e-12 74.3 44 84.1
BraA09t36649Z Brassica rapa HOM05D001367 ORTHO05D005289 5.8e-12 74.3 44 84.1
Glyma.02G052400 Glycine max HOM05D001367 ORTHO05D005289 7.6e-12 73.9 59 66.1
Sp2g30400 Schrenkiella parvula HOM05D001367 ORTHO05D005289 1.0e-11 73.6 44 81.8
CARHR281340 Cardamine hirsuta HOM05D001367 ORTHO05D005289 1.7e-11 72.8 44 79.5
Thhalv10004659m.g Eutrema salsugineum HOM05D001367 ORTHO05D005289 2.9e-11 72.0 45 84.4
VMungo0251G3431 Vigna mungo HOM05D001367 ORTHO05D005289 2.9e-11 72.0 59 64.4
Aa31LG5G12800 Aethionema arabicum HOM05D001367 ORTHO05D005289 3.8e-11 71.6 46 80.4
arahy.Tifrunner.gnm1.ann1.GBA1RV Arachis hypogaea HOM05D001367 ORTHO05D005289 4.9e-11 71.2 45 77.8
arahy.Tifrunner.gnm1.ann1.VM8KEN Arachis hypogaea HOM05D001367 ORTHO05D005289 4.9e-11 71.2 45 77.8
THA.LOC104821307 Tarenaya hassleriana HOM05D001367 ORTHO05D005289 4.9e-11 71.2 45 75.6
Aa31LG1G14900 Aethionema arabicum HOM05D001367 ORTHO05D005289 8.4e-11 70.5 41 82.9
Ca_22345_v3 Cicer arietinum L. HOM05D001367 ORTHO05D005289 8.4e-11 70.5 59 62.7
Psat4g096400 Pisum sativum HOM05D001367 ORTHO05D005289 8.4e-11 70.5 59 64.4
AL8G45150 Arabidopsis lyrata HOM05D001367 ORTHO05D005289 1.1e-10 70.1 45 80.0
Medtr8g076760 Medicago truncatula HOM05D001367 ORTHO05D005289 1.9e-10 69.3 45 75.6
Phvul.003G257600 Phaseolus vulgaris HOM05D001367 ORTHO05D005289 2.5e-10 68.9 59 61.0
Dinv40033 Davidia involucrata HOM05D001367 ORTHO05D005289 3.2e-10 68.6 45 73.3
CiPaw.08G137700 Carya illinoinensis HOM05D001367 ORTHO05D005289 4.2e-10 68.2 45 75.6
Lj4A210T32 Lonicera japonica HOM05D001367 ORTHO05D005289 7.1e-10 67.4 44 75.0
COL.COLO4_21999 Corchorus olitorius HOM05D001367 ORTHO05D005289 9.3e-10 67.0 45 68.9
Haze_03839 Corylus avellana HOM05D001367 ORTHO05D005289 9.3e-10 67.0 44 77.3
CAN.G206.221 Capsicum annuum HOM05D001367 ORTHO05D005289 1.2e-09 66.6 56 62.5
Eucgr.D01095 Eucalyptus grandis HOM05D001367 ORTHO05D005289 1.2e-09 66.6 45 71.1
Sed0026853 Sechium edule HOM05D001367 ORTHO05D005289 1.2e-09 66.6 44 72.7
SGA_v2.0_scaffold102G29914 Striga asiatica HOM05D001367 ORTHO05D005289 1.2e-09 66.6 48 64.6
Lj4g0019915 Lotus japonicus HOM05D001367 ORTHO05D005289 1.6e-09 66.2 45 68.9
ClCG01G019970 Citrullus lanatus HOM05D001367 ORTHO05D005289 2.1e-09 65.9 51 68.6
MELO3C001466.2 Cucumis melo HOM05D001367 ORTHO05D005289 2.1e-09 65.9 51 68.6
Solyc02g088770.3 Solanum lycopersicum HOM05D001367 ORTHO05D005289 2.1e-09 65.9 56 60.7
Sopen02g033480 Solanum pennellii HOM05D001367 ORTHO05D005289 2.1e-09 65.9 56 60.7
CSS0029948 Camellia sinensis var. sinensis HOM05D001367 ORTHO05D005289 2.7e-09 65.5 44 72.7
CSS0040366 Camellia sinensis var. sinensis HOM05D001367 ORTHO05D005289 2.7e-09 65.5 44 72.7
Lalb_Chr05g0229971 Lupinus albus HOM05D001367 ORTHO05D005289 2.7e-09 65.5 45 71.1
Nitab4.5_0004708g0060 Nicotiana tabacum HOM05D001367 ORTHO05D005289 2.7e-09 65.5 69 56.5
Potri.007G019000 Populus trichocarpa HOM05D001367 ORTHO05D005289 2.7e-09 65.5 45 71.1
TAR625G0100 Trochodendron aralioides HOM05D001367 ORTHO05D005289 2.7e-09 65.5 45 73.3
CANSAT01G0735 Cannabis sativa HOM05D001367 ORTHO05D005289 4.6e-09 64.7 46 76.1
Os03g0734700 Oryza sativa ssp. japonica HOM05D001367 ORTHO05D005289 6.0e-09 64.3 46 63.0
Rhsim08G0123300 Rhododendron simsii HOM05D001367 ORTHO05D005289 6.0e-09 64.3 44 70.5
RcHm_v2.0_Chr2g0100341 Rosa chinensis HOM05D001367 ORTHO05D005289 6.0e-09 64.3 45 71.1
TPR.G21550 Trifolium pratense HOM05D001367 ORTHO05D005289 6.0e-09 64.3 46 71.7
vmacro17725 Vaccinium macrocarpon HOM05D001367 ORTHO05D005289 6.0e-09 64.3 44 70.5
Manes.01G140400 Manihot esculenta HOM05D001367 ORTHO05D005289 7.9e-09 63.9 46 73.9
Prupe.7G162200 Prunus persica HOM05D001367 ORTHO05D005289 7.9e-09 63.9 45 66.7
VMungo0251G3319 Vigna mungo HOM05D001367 ORTHO05D005289 7.9e-09 63.9 46 71.7
CsaV3_6G046730 Cucumis sativus L. HOM05D001367 ORTHO05D005289 1.0e-08 63.5 51 66.7
MD02G1138700 Malus domestica HOM05D001367 ORTHO05D005289 1.0e-08 63.5 45 64.4
SGA_v2.0_scaffold51G18797 Striga asiatica HOM05D001367 ORTHO05D005289 1.0e-08 63.5 44 68.2
Gorai.011G100500 Gossypium raimondii HOM05D001367 ORTHO05D005289 1.3e-08 63.2 44 65.9
Solyc02g084770.3 Solanum lycopersicum HOM05D001367 ORTHO05D005289 1.3e-08 63.2 56 58.9
Sopen02g029440 Solanum pennellii HOM05D001367 ORTHO05D005289 1.3e-08 63.2 56 58.9
Cc07_g10110 Coffea canephora HOM05D001367 ORTHO05D005289 1.8e-08 62.8 44 68.2
Cpa.g.sc6.183 Carica papaya HOM05D001367 ORTHO05D005289 2.3e-08 62.4 45 68.9
FvH4_1g12470 Fragaria vesca HOM05D001367 ORTHO05D005289 2.3e-08 62.4 45 66.7
Gohir.D10G091500 Gossypium hirsutum HOM05D001367 ORTHO05D005289 2.3e-08 62.4 45 62.2
SalBow8G5134 Salvia bowleyana HOM05D001367 ORTHO05D005289 2.3e-08 62.4 44 61.4
Actinidia19221 Actinidia chinensis HOM05D001367 ORTHO05D005289 3.0e-08 62.0 45 60.0
MSTRG.2494 Avicennia marina HOM05D001367 ORTHO05D005289 3.9e-08 61.6 55 58.2
Ciclev10026117m.g Citrus clementina HOM05D001367 ORTHO05D005289 3.9e-08 61.6 57 61.4
Eucgr.D01096 Eucalyptus grandis HOM05D001367 ORTHO05D005289 3.9e-08 61.6 45 64.4
MBI11_g07619_MAGBIO Magnolia biondii HOM05D001367 ORTHO05D005289 3.9e-08 61.6 44 70.5
ECA238G0539 Erigeron canadensis HOM05D001367 ORTHO05D005289 5.1e-08 61.2 44 63.6
FAN23G2952 Fragaria x ananassa HOM05D001367 ORTHO05D005289 5.1e-08 61.2 44 68.2
FAN26G2838 Fragaria x ananassa HOM05D001367 ORTHO05D005289 5.1e-08 61.2 44 68.2
Zm00001eb215470 Zea mays HOM05D001367 ORTHO05D005289 5.1e-08 61.2 45 60.0
EL10As8g23884 Beta vulgaris HOM05D001367 ORTHO05D005289 6.7e-08 60.8 44 68.2
HanXRQChr14g0441441 Helianthus annuus HOM05D001367 ORTHO05D005289 6.7e-08 60.8 44 63.6
Lsat_1_v5_gn_2_78080 Lactuca sativa HOM05D001367 ORTHO05D005289 6.7e-08 60.8 44 63.6
Glyma.16G132600 Glycine max HOM05D001367 ORTHO05D005289 8.7e-08 60.5 81 48.1
Phvul.003G257800 Phaseolus vulgaris HOM05D001367 ORTHO05D005289 8.7e-08 60.5 45 71.1
PGR102G2174 Punica granatum HOM05D001367 ORTHO05D005289 8.7e-08 60.5 46 69.6
QL06p034902 Quercus lobata HOM05D001367 ORTHO05D005289 8.7e-08 60.5 46 67.4
QL10p007477 Quercus lobata HOM05D001367 ORTHO05D005289 8.7e-08 60.5 46 67.4
SHI04443 Sapria himalayana HOM05D001367 ORTHO05D005289 8.7e-08 60.5 45 60.0
ATR0794G093 Amborella trichopoda HOM05D001367 ORTHO05D005289 1.5e-07 59.7 44 65.9
DCAR_025976 Daucus carota HOM05D001367 ORTHO05D005289 1.5e-07 59.7 44 72.7
Migut.H02507 Erythranthe guttata HOM05D001367 ORTHO05D005289 1.5e-07 59.7 45 66.7
Medtr8g076740 Medicago truncatula HOM05D001367 ORTHO05D005289 1.5e-07 59.7 67 47.8
Oeu002028.1 Olea europaea HOM05D001367 ORTHO05D005289 1.9e-07 59.3 70 52.9
Thecc.01G027000 Theobroma cacao HOM05D001367 ORTHO05D005289 1.9e-07 59.3 45 57.8
PGSC0003DMG400003534 Solanum tuberosum HOM05D001367 ORTHO05D005289 3.3e-07 58.5 57 57.9
Duzib264G1017 Durio zibethinus HOM05D001367 ORTHO05D005289 4.3e-07 58.2 46 60.9
Hma1.2p1_0913F.1_g235990 Hydrangea macrophylla HOM05D001367 ORTHO05D005289 4.3e-07 58.2 46 63.0
Nn5g29718 Nelumbo nucifera HOM05D001367 ORTHO05D005289 4.3e-07 58.2 45 66.7
Atru.chr3.731 Acer truncatum HOM05D001367 ORTHO05D005289 5.7e-07 57.8 47 66.0
ECA246G2099 Erigeron canadensis HOM05D001367 ORTHO05D005289 5.7e-07 57.8 45 64.4
Gohir.A10G096600 Gossypium hirsutum HOM05D001367 ORTHO05D005289 1.3e-06 56.6 46 58.7
Lsat_1_v5_gn_3_75020 Lactuca sativa HOM05D001367 ORTHO05D005289 1.3e-06 56.6 47 61.7
Sc03g0003240 Simmondsia chinensis HOM05D001367 ORTHO05D005289 1.3e-06 56.6 46 63.0
FAN28G0074 Fragaria x ananassa HOM05D001367 ORTHO05D005289 1.6e-06 56.2 44 68.2
PSO170G2614 Papaver somniferum HOM05D001367 ORTHO05D005289 1.6e-06 56.2 56 53.6
PSO210G6386 Papaver somniferum HOM05D001367 ORTHO05D005289 1.6e-06 56.2 56 53.6
TWI53G1062 Tripterygium wilfordii HOM05D001367 ORTHO05D005289 1.6e-06 56.2 45 64.4
Mapoly0015s0117 Marchantia polymorpha HOM05D001367 ORTHO05D005289 3.7e-06 55.1 49 53.1
GSVIVG01018862001 Vitis vinifera HOM05D001367 ORTHO05D005289 3.7e-06 55.1 56 53.6
HanXRQChr07g0190381 Helianthus annuus HOM05D001367 ORTHO05D005289 6.2e-06 54.3 82 42.7
Pp3c2_22480 Physcomitrium patens HOM05D001367 ORTHO05D005289 6.2e-06 54.3 44 56.8


User provided reference genes

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