Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 2.5e-179 632.1 340 100.0
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 1.3e-116 423.7 237 99.6
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 2.1e-109 399.8 240 94.6
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 6.0e-109 398.3 247 91.9
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 4.3e-107 392.1 247 90.7
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 3.6e-106 389.0 240 93.8
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.8e-105 386.7 247 91.1
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 4.0e-105 385.6 246 89.0
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 6.9e-105 384.8 249 90.4
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 9.0e-105 384.4 240 91.2
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 5.8e-104 381.7 246 88.2
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.2e-101 374.0 261 84.3
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 5.6e-99 365.2 246 82.9
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.3e-98 364.0 246 83.3
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.8e-98 362.8 244 84.0
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.4e-97 360.5 239 87.0
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 6.9e-97 358.2 236 85.6
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 4.9e-87 325.5 244 76.2
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 9.0e-81 304.7 243 73.3
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.6e-80 303.1 243 72.8
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 4.5e-80 302.4 244 72.1
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 5.8e-80 302.0 243 68.3
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.0e-79 301.2 244 72.1
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.2e-79 300.1 244 70.9
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 6.5e-79 298.5 247 68.8
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 8.4e-79 298.1 243 70.8
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.1e-78 297.7 245 71.0
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.4e-78 297.4 248 69.8
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.4e-78 297.4 244 71.7
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.4e-78 297.4 241 67.2
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.4e-78 297.4 243 70.4
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 4.2e-78 295.8 242 68.2
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 3.5e-77 292.7 245 68.6
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 4.6e-77 292.4 242 68.6
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 6.1e-77 292.0 243 70.8
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.0e-76 291.2 244 70.5
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.8e-76 290.4 244 67.2
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 3.9e-76 289.3 246 65.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 6.7e-76 288.5 244 68.9
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.1e-75 287.7 245 65.3
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.5e-75 287.3 243 68.7
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.9e-75 287.0 244 70.1
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.5e-75 286.6 246 68.7
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 4.3e-75 285.8 235 70.2
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 5.7e-75 285.4 244 65.2
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 5.7e-75 285.4 244 69.7
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.4e-75 285.0 247 66.4
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 9.7e-75 284.6 242 68.2
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.3e-74 284.3 245 66.9
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.6e-74 283.9 244 68.4
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.6e-74 283.9 243 68.3
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.2e-74 283.5 240 70.4
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 6.3e-74 282.0 246 67.1
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.1e-73 281.2 244 67.2
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.1e-73 281.2 243 66.7
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.4e-73 280.0 243 67.5
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 4.1e-73 279.3 242 64.5
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 5.3e-73 278.9 250 65.6
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 9.0e-73 278.1 244 65.2
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 9.0e-73 278.1 243 64.6
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.2e-72 277.7 207 69.1
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.0e-72 276.9 243 63.8
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 3.4e-72 276.2 242 67.8
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.4e-72 276.2 242 68.6
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 4.5e-72 275.8 245 62.4
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 7.7e-72 275.0 254 65.4
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 7.7e-72 275.0 245 68.2
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.0e-71 274.6 243 66.7
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.0e-71 274.6 243 67.5
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.3e-71 274.2 243 65.8
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 5.0e-71 272.3 244 64.3
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 6.5e-71 271.9 244 66.0
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 6.5e-71 271.9 237 67.9
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.4e-70 270.8 243 65.8
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.9e-70 270.4 247 66.0
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 3.2e-70 269.6 244 67.6
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 4.2e-70 269.2 250 64.8
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 5.5e-70 268.9 246 65.9
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 7.2e-70 268.5 243 61.7
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 9.4e-70 268.1 244 62.7
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.6e-69 267.3 244 64.8
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.1e-69 266.9 241 61.8
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.7e-69 266.5 248 67.3
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 4.6e-69 265.8 248 64.1
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 6.1e-69 265.4 245 62.9
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 2.3e-68 263.5 243 65.0
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.3e-68 263.5 245 64.9
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 5.1e-68 262.3 234 68.4
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 5.1e-68 262.3 242 63.6
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 5.1e-68 262.3 194 70.1
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.5e-67 260.0 208 65.9
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 3.3e-67 259.6 234 67.5
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 7.4e-67 258.5 268 59.3
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 9.7e-67 258.1 245 64.9
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.3e-66 257.7 247 65.6
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.2e-66 256.9 243 64.2
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 6.3e-66 255.4 342 50.3
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.2e-66 255.0 247 65.2
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.4e-65 254.2 240 63.8
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.8e-65 253.8 243 61.3
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 4.1e-65 252.7 266 59.4
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 5.3e-65 252.3 244 59.0
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 9.1e-65 251.5 242 62.0
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.0e-64 250.4 247 61.1
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.2e-63 246.9 248 58.9
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.1e-62 244.6 221 59.7
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.7e-61 240.0 287 55.4
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 3.6e-61 239.6 237 61.6
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.5e-59 234.2 166 79.5
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 9.1e-57 224.9 247 57.5
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 5.9e-56 222.2 238 55.9
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 2.2e-55 220.3 282 49.3
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.8e-55 219.5 242 55.8
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.0e-55 219.2 330 48.5
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 5.0e-55 219.2 236 59.7
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.5e-54 217.6 247 55.9
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 5.2e-52 209.1 234 53.8
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 3.7e-50 203.0 243 56.0
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.1e-49 201.4 168 63.1
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 2.4e-49 200.3 214 53.3
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.1e-45 185.7 240 50.8
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.4e-44 184.5 231 45.9
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.0e-44 183.0 127 73.2
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 1.2e-43 181.4 247 51.4
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.4e-41 174.5 183 65.0
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.1e-41 172.9 241 48.5
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.0e-41 172.2 142 65.5
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.5e-38 163.7 138 65.2
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 2.5e-38 163.7 137 64.2
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.3e-36 157.1 139 71.2
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.7e-35 152.5 102 87.3
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 7.0e-33 145.6 139 56.1
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.1e-30 138.3 255 38.4
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 2.9e-26 123.6 120 67.5
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.1e-25 121.7 324 38.6
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.4e-25 121.3 233 34.3
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.1e-25 119.8 61 93.4
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 2.5e-22 110.5 213 32.4
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 5.2e-20 102.8 228 33.3
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 2.0e-16 90.9 90 52.2
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 2.1e-13 80.9 73 63.0
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 4.7e-13 79.7 97 46.4
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 4.0e-12 76.6 77 51.9
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.4e-09 66.2 76 63.2
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.7e-07 61.2 175 32.6
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.3e-07 60.8 66 51.5
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 6.6e-07 59.3 64 50.0
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 7.3e-06 55.8 34 64.7


User provided reference genes

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