Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 4.4e-98 361.3 186 100.0
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 4.4e-98 361.3 186 100.0
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 4.4e-98 361.3 186 100.0
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 1.4e-96 356.3 186 98.9
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 3.2e-96 355.1 186 98.4
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.1e-93 346.7 186 94.6
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 5.3e-91 337.8 186 92.5
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 5.3e-91 337.8 186 92.5
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 5.3e-91 337.8 186 92.5
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 5.3e-91 337.8 186 92.5
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 5.3e-91 337.8 186 92.5
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 5.3e-91 337.8 186 92.5
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 1.2e-90 336.7 186 92.5
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 8.4e-89 330.5 186 91.4
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.9e-88 329.3 186 91.9
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 2.4e-88 328.9 186 90.9
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 4.2e-88 328.2 186 90.9
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 3.5e-87 325.1 186 88.7
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 4.6e-87 324.7 180 91.7
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 2.0e-82 309.3 184 85.9
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 2.0e-82 309.3 184 85.3
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 7.6e-82 307.4 182 85.2
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 7.6e-82 307.4 182 85.2
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 9.9e-82 307.0 184 84.2
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.7e-81 306.2 182 84.6
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.7e-81 306.2 184 85.3
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 6.4e-81 304.3 186 83.3
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.1e-80 303.5 186 82.8
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.1e-80 303.5 186 82.8
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 1.9e-80 302.8 185 83.2
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 2.4e-80 302.4 182 84.1
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.4e-80 302.4 182 84.1
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 3.2e-80 302.0 186 82.8
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 5.5e-80 301.2 180 85.0
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 5.5e-80 301.2 185 82.7
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 5.5e-80 301.2 180 85.0
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 7.1e-80 300.8 180 84.4
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 7.1e-80 300.8 184 83.2
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.6e-79 299.7 182 83.0
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 1.6e-79 299.7 180 83.3
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 2.1e-79 299.3 182 83.5
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 2.7e-79 298.9 180 83.9
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 2.7e-79 298.9 185 81.6
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 3.5e-79 298.5 184 83.2
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 3.5e-79 298.5 184 83.2
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 4.6e-79 298.1 181 82.9
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 4.6e-79 298.1 185 82.2
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 6.0e-79 297.7 184 82.1
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 7.9e-79 297.4 182 82.4
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.0e-78 297.0 181 81.8
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.0e-78 297.0 184 82.1
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.3e-78 296.6 180 82.8
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.8e-78 296.2 184 82.1
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 2.3e-78 295.8 184 79.3
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 3.0e-78 295.4 180 83.3
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 5.1e-78 294.7 184 81.5
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 8.7e-78 293.9 184 80.4
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.5e-77 293.1 184 80.4
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.5e-77 292.4 184 82.1
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 3.3e-77 292.0 182 80.8
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 3.3e-77 292.0 184 79.3
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 4.3e-77 291.6 184 80.4
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 4.3e-77 291.6 184 78.3
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 5.6e-77 291.2 180 82.2
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 5.6e-77 291.2 180 82.2
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 7.4e-77 290.8 181 81.2
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 7.4e-77 290.8 181 81.8
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 7.4e-77 290.8 181 81.2
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 9.6e-77 290.4 181 82.9
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 2.1e-76 289.3 180 80.6
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.8e-76 288.9 181 80.1
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 3.7e-76 288.5 184 78.8
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 3.7e-76 288.5 184 80.4
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 6.2e-76 287.7 181 80.1
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.1e-75 287.0 181 79.6
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.1e-75 287.0 181 79.6
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 1.4e-75 286.6 180 80.6
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.8e-75 286.2 181 79.0
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 2.4e-75 285.8 181 79.0
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.1e-75 285.4 178 80.9
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 4.0e-75 285.0 181 79.0
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 5.3e-75 284.6 184 78.3
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 9.0e-75 283.9 184 77.7
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.2e-74 283.5 181 78.5
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.5e-74 283.1 184 78.3
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 2.6e-74 282.3 182 75.3
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 4.5e-74 281.6 184 80.4
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 5.8e-74 281.2 180 78.3
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 1.0e-73 280.4 181 76.2
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 1.7e-73 279.6 200 72.5
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 4.9e-73 278.1 186 75.8
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 4.9e-73 278.1 184 75.0
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 8.4e-73 277.3 180 76.7
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 1.6e-71 273.1 172 80.2
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 3.5e-71 271.9 184 74.5
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.3e-70 270.0 184 73.9
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.1e-69 266.9 177 73.4
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 3.3e-69 265.4 176 76.7
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 9.7e-69 263.8 184 72.3
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 8.5e-65 250.8 169 74.6
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.0e-62 243.8 180 67.8
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 3.9e-62 241.9 149 82.6
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 8.8e-62 240.7 180 66.1
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 1.1e-61 240.4 180 66.7
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 4.8e-60 235.0 141 82.3
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.3e-60 234.6 143 82.5
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 6.3e-60 234.6 279 49.1
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 4.5e-58 228.4 180 62.2
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 4.4e-53 211.8 124 83.1
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 4.4e-53 211.8 123 87.0
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 9.7e-53 210.7 184 65.2
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 3.1e-51 205.7 257 49.0
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.1e-51 205.3 182 61.0
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 8.5e-41 171.0 101 86.1
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.6e-39 165.6 184 53.8
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.5e-37 160.2 104 74.0
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 4.4e-37 158.7 101 79.2
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 5.7e-37 158.3 93 87.1
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 3.1e-35 152.5 130 65.4
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 3.5e-34 149.1 89 83.1
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 4.5e-34 148.7 185 45.4
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 7.7e-34 147.9 176 45.5
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 5.5e-32 141.7 93 82.8
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 4.4e-29 132.1 87 80.5
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 9.8e-29 131.0 80 82.5
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 9.8e-29 131.0 80 82.5
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 9.8e-29 131.0 80 82.5
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 1.8e-27 126.7 82 78.0
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 2.4e-27 126.3 80 80.0
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 2.4e-27 126.3 80 80.0
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 4.1e-27 125.6 84 71.4
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 9.1e-27 124.4 80 78.8
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 1.6e-26 123.6 75 85.3
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.5e-24 116.3 176 34.1
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.6e-23 113.6 78 69.2
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 2.8e-23 112.8 107 58.9
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 5.7e-21 105.1 182 42.9
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 2.4e-19 99.8 88 61.4
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.0e-17 94.4 210 31.4
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 1.8e-14 83.6 73 56.2
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 1.5e-13 80.5 43 93.0
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 1.5e-13 80.5 74 58.1
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 7.0e-11 71.6 48 81.2
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 2.7e-10 69.7 46 84.8
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 2.3e-09 66.6 46 80.4
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 3.6e-07 59.3 35 77.1
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 4.7e-07 58.9 40 65.0


User provided reference genes

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