Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 1.6e-32 142.1 70 100.0
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 4.1e-28 127.5 65 96.9
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.0e-26 122.9 65 90.8
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 1.3e-26 122.5 65 90.8
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 1.3e-26 122.5 65 90.8
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 1.3e-26 122.5 65 90.8
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 5.0e-26 120.6 65 87.7
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 5.0e-26 120.6 65 87.7
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 4.4e-22 107.5 64 79.7
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 2.6e-19 98.2 65 69.2
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 2.6e-19 98.2 63 71.4
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 2.6e-19 98.2 65 67.7
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 3.4e-19 97.8 65 69.2
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 7.7e-19 96.7 61 68.9
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 7.7e-19 96.7 65 66.2
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 7.7e-19 96.7 65 67.7
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.0e-18 96.3 63 68.3
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 1.3e-18 95.9 65 67.7
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 1.7e-18 95.5 62 67.7
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.7e-18 95.5 65 66.2
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 2.2e-18 95.1 62 69.4
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 2.2e-18 95.1 62 69.4
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 2.2e-18 95.1 65 67.7
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.9e-18 94.7 62 71.0
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 2.9e-18 94.7 65 67.7
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 3.8e-18 94.4 65 64.6
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 3.8e-18 94.4 62 69.4
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 5.0e-18 94.0 62 69.4
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 6.5e-18 93.6 62 69.4
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 6.5e-18 93.6 65 64.6
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 8.5e-18 93.2 55 76.4
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 8.5e-18 93.2 65 66.2
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 8.5e-18 93.2 65 64.6
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 8.5e-18 93.2 63 66.7
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.1e-17 92.8 62 67.7
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.1e-17 92.8 65 66.2
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.1e-17 92.8 62 67.7
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.1e-17 92.8 62 67.7
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.4e-17 92.4 62 69.4
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.4e-17 92.4 63 68.3
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-17 92.4 65 64.6
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-17 92.4 65 64.6
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.4e-17 92.4 65 64.6
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.4e-17 92.4 65 64.6
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 1.9e-17 92.0 62 66.1
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.9e-17 92.0 65 64.6
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.9e-17 92.0 62 66.1
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.9e-17 92.0 65 64.6
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.9e-17 92.0 62 64.5
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.9e-17 92.0 62 67.7
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 1.9e-17 92.0 61 63.9
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 2.5e-17 91.7 65 63.1
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 2.5e-17 91.7 65 63.1
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 2.5e-17 91.7 65 61.5
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 2.5e-17 91.7 65 64.6
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.5e-17 91.7 65 63.1
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 3.2e-17 91.3 63 63.5
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 3.2e-17 91.3 65 63.1
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 3.2e-17 91.3 62 66.1
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 3.2e-17 91.3 62 64.5
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 3.2e-17 91.3 67 59.7
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 4.2e-17 90.9 65 63.1
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 4.2e-17 90.9 62 67.7
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 4.2e-17 90.9 65 64.6
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 4.2e-17 90.9 65 63.1
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 4.2e-17 90.9 62 64.5
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.2e-17 90.9 61 67.2
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 4.2e-17 90.9 63 65.1
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 5.5e-17 90.5 60 66.7
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 5.5e-17 90.5 65 63.1
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 7.2e-17 90.1 65 61.5
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 7.2e-17 90.1 65 63.1
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 7.2e-17 90.1 65 63.1
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 7.2e-17 90.1 65 63.1
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 7.2e-17 90.1 65 61.5
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 7.2e-17 90.1 63 66.7
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 7.2e-17 90.1 65 60.0
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 7.2e-17 90.1 63 65.1
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 7.2e-17 90.1 63 66.7
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 9.4e-17 89.7 62 62.9
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 9.4e-17 89.7 62 66.1
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 9.4e-17 89.7 65 63.1
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 9.4e-17 89.7 62 66.1
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 9.4e-17 89.7 65 63.1
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 1.2e-16 89.4 60 68.3
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 1.2e-16 89.4 63 65.1
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.2e-16 89.4 65 60.0
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.2e-16 89.4 58 69.0
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.2e-16 89.4 62 66.1
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.6e-16 89.0 60 65.0
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.6e-16 89.0 62 64.5
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.6e-16 89.0 58 67.2
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 2.1e-16 88.6 62 62.9
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.1e-16 88.6 62 64.5
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 2.1e-16 88.6 61 62.3
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 2.7e-16 88.2 65 61.5
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 2.7e-16 88.2 63 65.1
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.7e-16 88.2 65 58.5
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 2.7e-16 88.2 59 67.8
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 3.6e-16 87.8 63 63.5
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 3.6e-16 87.8 61 60.7
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.6e-16 87.8 65 58.5
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 3.6e-16 87.8 65 58.5
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 4.7e-16 87.4 60 65.0
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 8.0e-16 86.7 61 59.0
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 8.0e-16 86.7 63 61.9
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 8.0e-16 86.7 56 67.9
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 8.0e-16 86.7 65 60.0
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.0e-15 86.3 65 58.5
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.0e-15 86.3 62 58.1
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.0e-15 86.3 62 58.1
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 1.8e-15 85.5 65 56.9
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 2.3e-15 85.1 62 59.7
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 3.9e-15 84.3 57 70.2
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 3.9e-15 84.3 62 58.1
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.9e-15 84.3 62 58.1
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 3.9e-15 84.3 55 67.3
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 5.2e-15 84.0 62 58.1
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 5.2e-15 84.0 65 53.8
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.1e-14 82.8 65 55.4
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 2.6e-14 81.6 62 54.8
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 4.4e-14 80.9 65 55.4
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 5.7e-14 80.5 62 56.5
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 5.7e-14 80.5 56 57.1
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 7.4e-14 80.1 63 57.1
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 7.4e-14 80.1 63 60.3
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 7.4e-14 80.1 63 60.3
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 7.4e-14 80.1 63 60.3
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 7.4e-14 80.1 63 60.3
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 9.7e-14 79.7 63 57.1
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.7e-13 79.0 65 53.8
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 3.7e-13 77.8 52 67.3
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.7e-13 77.8 65 52.3
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 8.2e-13 76.6 65 52.3
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 8.2e-13 76.6 59 52.5
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.8e-12 75.5 58 60.3
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 2.4e-12 75.1 63 55.6
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.1e-12 74.3 55 60.0
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 7.0e-12 73.6 65 49.2
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 3.2e-09 64.7 59 52.5
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 5.5e-09 63.9 56 48.2
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.2e-08 62.8 59 52.5
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 5.2e-07 57.4 57 47.4
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 6.7e-07 57.0 37 64.9
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 9.7e-06 53.1 70 32.9


User provided reference genes

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