Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.4e-74 283.1 173 100.0
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 9.3e-74 280.4 173 96.0
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 4.6e-73 278.1 173 96.0
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 5.6e-71 271.2 173 90.2
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.3e-70 270.0 173 89.6
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 4.0e-69 265.0 177 96.0
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 4.6e-65 251.5 176 89.2
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 4.6e-65 251.5 176 89.2
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 1.9e-63 246.1 178 83.7
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.9e-63 246.1 177 86.4
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 5.3e-61 238.0 174 82.2
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 7.6e-60 234.2 176 81.2
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 1.7e-59 233.0 178 83.1
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 2.2e-59 232.6 179 82.1
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 2.9e-59 232.3 176 83.5
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 8.4e-59 230.7 178 80.3
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 2.8e-54 215.7 213 67.6
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.5e-52 208.4 181 75.1
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 3.2e-50 202.2 183 69.9
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 9.0e-45 184.1 179 69.3
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 2.0e-44 183.0 182 64.8
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 5.9e-44 181.4 186 63.4
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 7.7e-44 181.0 175 62.9
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.7e-43 179.9 181 68.0
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.7e-43 179.9 177 61.6
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.9e-43 179.1 187 68.4
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 5.0e-43 178.3 175 61.1
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 5.0e-43 178.3 172 69.8
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 6.5e-43 177.9 189 69.8
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 6.5e-43 177.9 173 72.8
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 8.5e-43 177.6 173 74.6
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.1e-42 177.2 185 60.0
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.1e-42 177.2 174 62.6
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 2.5e-42 176.0 186 61.3
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 3.2e-42 175.6 186 68.8
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 4.2e-42 175.3 179 69.8
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 5.5e-42 174.9 190 66.8
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 7.2e-42 174.5 186 68.8
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.2e-41 173.7 173 67.1
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 1.2e-41 173.7 177 62.1
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.2e-41 173.7 181 67.4
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.2e-41 173.7 187 69.0
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.6e-41 173.3 139 79.1
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.6e-41 173.3 173 71.1
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 3.6e-41 172.2 183 68.9
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 3.6e-41 172.2 179 62.6
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 4.6e-41 171.8 183 67.2
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 6.1e-41 171.4 176 71.6
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.1e-41 171.4 170 68.2
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 7.9e-41 171.0 185 64.9
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.9e-41 171.0 172 68.6
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 7.9e-41 171.0 190 65.8
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.0e-40 170.6 147 73.5
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.0e-40 170.6 173 66.5
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.4e-40 170.2 190 66.3
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.8e-40 169.9 195 62.1
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.8e-40 169.9 185 60.5
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 1.8e-40 169.9 190 68.4
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.8e-40 169.9 184 64.7
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.3e-40 169.5 190 65.3
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 3.0e-40 169.1 176 68.2
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 3.0e-40 169.1 148 75.7
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.9e-40 168.7 179 55.3
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 5.1e-40 168.3 150 78.0
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.1e-40 168.3 175 72.6
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 5.1e-40 168.3 186 65.1
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 5.1e-40 168.3 177 62.7
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 6.7e-40 167.9 170 66.5
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 6.7e-40 167.9 190 64.7
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 8.8e-40 167.5 172 71.5
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.1e-39 167.2 175 61.1
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.1e-39 167.2 174 56.9
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.1e-39 167.2 155 71.6
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.5e-39 166.8 183 66.1
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.5e-39 166.8 177 58.2
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.0e-39 166.4 184 65.8
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.3e-39 165.6 172 63.4
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 5.7e-39 164.9 165 61.8
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.7e-39 164.9 175 66.3
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 5.7e-39 164.9 173 69.9
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 7.4e-39 164.5 176 66.5
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 7.4e-39 164.5 148 68.2
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 9.7e-39 164.1 196 63.3
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.3e-38 163.7 185 65.9
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.7e-38 163.3 196 62.8
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 2.2e-38 162.9 176 61.9
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 2.8e-38 162.5 178 60.7
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 3.7e-38 162.2 144 70.8
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 3.7e-38 162.2 186 66.7
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 3.7e-38 162.2 163 60.1
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 8.2e-38 161.0 181 66.3
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 8.2e-38 161.0 194 65.5
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 8.2e-38 161.0 186 65.6
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 8.2e-38 161.0 144 63.9
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 8.2e-38 161.0 135 74.8
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 8.2e-38 161.0 161 63.4
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.1e-37 160.6 144 63.2
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.4e-37 160.2 196 59.7
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 3.1e-37 159.1 186 59.7
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 4.1e-37 158.7 186 64.5
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.1e-37 158.7 173 60.7
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 6.9e-37 157.9 155 72.9
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 9.1e-37 157.5 173 61.8
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.2e-36 157.1 191 63.9
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.5e-36 156.8 194 56.2
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.0e-36 156.4 144 76.4
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 3.4e-36 155.6 172 67.4
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 7.7e-36 154.5 136 77.9
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.7e-35 153.3 193 64.2
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 2.9e-35 152.5 144 60.4
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 6.5e-35 151.4 178 64.0
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.1e-34 150.6 195 51.3
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.9e-34 149.8 140 72.1
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 5.5e-34 148.3 189 48.7
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 3.6e-33 145.6 176 60.2
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 4.7e-33 145.2 89 84.3
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 6.1e-33 144.8 82 87.8
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 7.9e-33 144.4 190 56.8
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.3e-32 142.9 88 81.8
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.1e-31 140.6 160 61.2
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 2.6e-31 139.4 156 62.8
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 2.2e-30 136.3 159 63.5
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.4e-29 133.7 134 56.0
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.4e-29 132.9 168 62.5
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 9.1e-29 131.0 75 85.3
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.3e-27 127.1 110 64.5
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.1e-26 124.0 70 85.7
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 3.2e-26 122.5 73 89.0
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 6.1e-25 118.2 69 78.3
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 8.8e-24 114.4 145 61.4
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 6.3e-22 108.2 86 61.6
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 2.0e-20 103.2 177 52.0
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.3e-19 100.5 133 41.4
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 1.3e-19 100.5 141 61.7
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 3.8e-19 99.0 112 68.8
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.9e-18 96.7 81 58.0
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.2e-17 94.0 113 69.0
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.6e-17 93.6 79 55.7
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 6.1e-17 91.7 102 52.0
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 6.3e-14 81.6 170 51.2
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.6e-12 77.0 54 74.1
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.2e-09 67.4 67 50.7
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 3.6e-09 65.9 140 53.6
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.0e-07 60.1 129 49.6
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.7e-06 57.0 39 59.0


User provided reference genes

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