Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p11140 Brassica napus HOM05D007776 ORTHO05D009812 2.4e-127 458.8 217 100.0
BolC6t36249H Brassica oleracea HOM05D007776 ORTHO05D009812 9.1e-127 456.8 217 99.5
BcaC08g43737 Brassica carinata HOM05D007776 ORTHO05D009812 6.4e-64 248.1 120 99.2
BraA09t38716Z Brassica rapa HOM05D007776 ORTHO05D009812 8.4e-64 247.7 120 99.2
A09p31800 Brassica napus HOM05D007776 ORTHO05D009812 1.6e-62 243.4 120 97.5
Sp1g30150 Schrenkiella parvula HOM05D007776 ORTHO05D009812 6.6e-53 211.5 122 84.4
Thhalv10001838m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 7.1e-47 191.4 120 80.8
CARHR034200 Cardamine hirsuta HOM05D007776 ORTHO05D009812 1.2e-46 190.7 104 84.6
AT1G35430 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 1.3e-45 187.2 106 84.9
AL1G50270 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 2.3e-45 186.4 106 84.0
Carub.0001s3303 Capsella rubella HOM05D007776 ORTHO05D009812 9.6e-44 181.0 114 79.8
Aa31LG6G8730 Aethionema arabicum HOM05D007776 ORTHO05D009812 8.1e-43 177.9 135 69.6
THA.LOC104806792 Tarenaya hassleriana HOM05D007776 ORTHO05D009812 2.1e-35 153.3 144 58.3
C06p01020 Brassica napus HOM05D013239 ORTHO05D027781 3.1e-34 149.4 73 89.0
Thhalv10029064m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 5.5e-31 138.7 132 61.4
BolC6t36445H Brassica oleracea HOM05D013239 ORTHO05D042748 1.2e-30 137.5 74 81.1
CARHR260240 Cardamine hirsuta HOM05D007776 ORTHO05D009812 3.1e-26 122.9 125 56.8
FAN08G2421 Fragaria x ananassa HOM05D007776 ORTHO05D009812 5.9e-25 118.6 138 52.9
CANSAT25G0596 Cannabis sativa HOM05D007776 ORTHO05D009812 5.0e-24 115.5 102 58.8
FAN04G0521 Fragaria x ananassa HOM05D007776 ORTHO05D009812 8.5e-24 114.8 101 60.4
TWI14G0313 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 1.1e-23 114.4 115 58.3
Manes.02G198100 Manihot esculenta HOM05D007776 ORTHO05D009812 1.9e-23 113.6 113 56.6
Prupe.1G555000 Prunus persica HOM05D007776 ORTHO05D009812 7.2e-23 111.7 104 59.6
FAN04G1877 Fragaria x ananassa HOM05D007776 ORTHO05D009812 9.3e-23 111.3 101 59.4
Potri.013G107300 Populus trichocarpa HOM05D007776 ORTHO05D009812 9.3e-23 111.3 117 53.0
FvH4_5g31870 Fragaria vesca HOM05D007776 ORTHO05D009812 1.2e-22 110.9 124 55.6
FAN18G1270 Fragaria x ananassa HOM05D007776 ORTHO05D009812 1.6e-22 110.5 124 55.6
BcaB01g02801 Brassica carinata HOM05D007776 ORTHO05D009812 2.7e-22 109.8 129 54.3
Gohir.D05G288000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 2.7e-22 109.8 138 47.8
Gorai.009G303100 Gossypium raimondii HOM05D007776 ORTHO05D009812 2.7e-22 109.8 138 47.8
Ciclev10002690m.g Citrus clementina HOM05D007776 ORTHO05D009812 4.6e-22 109.0 177 40.7
BcaC01g04727 Brassica carinata HOM05D007776 ORTHO05D009812 7.9e-22 108.2 130 53.8
TWI59G0674 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 7.9e-22 108.2 117 56.4
CiPaw.07G236300 Carya illinoinensis HOM05D007776 ORTHO05D009812 1.0e-21 107.8 100 55.0
AL6G42920 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 1.3e-21 107.5 129 53.5
CiPaw.05G123100 Carya illinoinensis HOM05D007776 ORTHO05D009812 1.8e-21 107.1 100 54.0
MD15G1406800 Malus domestica HOM05D007776 ORTHO05D009812 5.1e-21 105.5 130 48.5
RcHm_v2.0_Chr7g0227891 Rosa chinensis HOM05D007776 ORTHO05D009812 6.7e-21 105.1 122 50.0
C03p34420 Brassica napus HOM05D007776 ORTHO05D009812 8.7e-21 104.8 130 53.1
BolC3t15751H Brassica oleracea HOM05D007776 ORTHO05D009812 8.7e-21 104.8 130 53.1
Gohir.A05G287000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 1.5e-20 104.0 138 44.9
A03p28480 Brassica napus HOM05D007776 ORTHO05D009812 1.9e-20 103.6 130 53.1
BraA03t12053Z Brassica rapa HOM05D007776 ORTHO05D009812 1.9e-20 103.6 130 53.1
Sp6g08370 Schrenkiella parvula HOM05D007776 ORTHO05D009812 7.4e-20 101.7 133 51.9
Psat5g210040 Pisum sativum HOM05D007776 ORTHO05D009812 1.3e-19 100.9 115 47.0
Sabra19G0091100 Salix brachista HOM05D007776 ORTHO05D009812 1.6e-19 100.5 109 55.0
Ca_14480_v3 Cicer arietinum L. HOM05D007776 ORTHO05D009812 2.8e-19 99.8 115 47.8
Sabra13G0092600 Salix brachista HOM05D007776 ORTHO05D009812 6.3e-19 98.6 119 49.6
Duzib177G0943 Durio zibethinus HOM05D007776 ORTHO05D009812 8.2e-19 98.2 131 44.3
Lalb_Chr25g0282901 Lupinus albus HOM05D007776 ORTHO05D009812 8.2e-19 98.2 112 50.9
Potri.019G079800 Populus trichocarpa HOM05D007776 ORTHO05D009812 2.4e-18 96.7 116 51.7
VMungo1080G1686 Vigna mungo HOM05D007776 ORTHO05D009812 4.1e-18 95.9 138 44.2
Dinv41753 Davidia involucrata HOM05D000238 ORTHO05D002999 6.9e-18 95.1 119 47.9
Cfa012949 Carpinus fangiana HOM05D007776 ORTHO05D009812 9.1e-18 94.7 114 43.9
Sed0008767 Sechium edule HOM05D007776 ORTHO05D009812 9.1e-18 94.7 106 48.1
AT4G09170 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 1.2e-17 94.4 139 47.5
TPR.G27845 Trifolium pratense HOM05D000479 ORTHO05D009812 3.4e-17 92.8 150 35.3
Medtr0045s0130 Medicago truncatula HOM05D007776 ORTHO05D009812 4.5e-17 92.4 106 49.1
Lj3g0020626 Lotus japonicus HOM05D007776 ORTHO05D009812 5.9e-17 92.0 98 52.0
Haze_21304 Corylus avellana HOM05D007776 ORTHO05D009812 7.7e-17 91.7 112 46.4
ClCG11G008540 Citrullus lanatus HOM05D007776 ORTHO05D009812 6.5e-16 88.6 117 47.0
Duzib116G0238 Durio zibethinus HOM05D007776 ORTHO05D009812 8.5e-16 88.2 107 46.7
PGR042G2621 Punica granatum HOM05D007776 ORTHO05D009812 1.1e-15 87.8 137 46.0
Cpa.g.sc507.3 Carica papaya HOM05D007776 ORTHO05D009812 1.9e-15 87.0 114 44.7
PGSC0003DMG400006837 Solanum tuberosum HOM05D007776 ORTHO05D009812 3.2e-15 86.3 124 46.8
Nn5g27525 Nelumbo nucifera HOM05D007776 ORTHO05D009812 5.5e-15 85.5 105 48.6
BraA09t37269Z Brassica rapa HOM05D013239 ORTHO05D027781 1.6e-14 84.0 72 56.9
Solyc01g087860.2 Solanum lycopersicum HOM05D007776 ORTHO05D009812 2.7e-14 83.2 137 42.3
QL02p026198 Quercus lobata HOM05D007776 ORTHO05D009812 3.6e-14 82.8 118 40.7
Sopen01g034790 Solanum pennellii HOM05D007776 ORTHO05D009812 3.6e-14 82.8 121 42.1
Thecc.08G190700 Theobroma cacao HOM05D007776 ORTHO05D009812 1.0e-13 81.3 121 41.3
Migut.C01313 Erythranthe guttata HOM05D007776 ORTHO05D009812 3.0e-13 79.7 134 41.8
Phvul.005G023800 Phaseolus vulgaris HOM05D007776 ORTHO05D009812 3.9e-13 79.3 98 45.9
Glyma.10G090400 Glycine max HOM05D007776 ORTHO05D009812 8.8e-13 78.2 79 54.4
Glyma.15G276200 Glycine max HOM05D007776 ORTHO05D009812 4.4e-12 75.9 78 50.0
BolC7t43849H Brassica oleracea HOM05D013239 ORTHO05D027781 1.3e-11 74.3 59 59.3
Ah.05g178510 Amaranthus hybridus HOM05D007776 ORTHO05D009812 2.2e-11 73.6 117 42.7
CSS0049282 Camellia sinensis var. sinensis HOM05D007776 ORTHO05D009812 3.7e-11 72.8 103 43.7
A08p01280 Brassica napus HOM05D016977 ORTHO05D009812 4.8e-11 72.4 71 46.5
TAR628G0395 Trochodendron aralioides HOM05D007776 ORTHO05D009812 1.4e-10 70.9 100 42.0
unitig_46.g17995 Utricularia gibba HOM05D007776 ORTHO05D009812 3.4e-09 66.2 104 35.6
EL10Ac1g00128 Beta vulgaris HOM05D007776 ORTHO05D009812 4.5e-09 65.9 127 35.4
MD08G1218400 Malus domestica HOM05D007776 ORTHO05D009812 1.3e-08 64.3 99 43.4
HanXRQChr05g0130261 Helianthus annuus HOM05D007776 ORTHO05D009812 3.2e-07 59.7 102 41.2
COL.COLO4_25869 Corchorus olitorius HOM05D007776 ORTHO05D009812 4.2e-07 59.3 49 57.1
Rhsim12G0006900 Rhododendron simsii HOM05D007776 ORTHO05D009812 4.2e-07 59.3 91 45.1
Cc10_g10000 Coffea canephora HOM05D007776 ORTHO05D009812 5.5e-07 58.9 92 41.3
BcaC08g43965 Brassica carinata HOM05D013239 ORTHO05D027781 7.2e-07 58.5 63 50.8
unitig_747.g21557 Utricularia gibba HOM05D007776 ORTHO05D009812 1.2e-06 57.8 129 37.2
SalBow7G1484 Salvia bowleyana HOM05D007776 ORTHO05D009812 7.9e-06 55.1 75 45.3


User provided reference genes

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