Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p11060 Brassica napus HOM05D003774 ORTHO05D010174 5.7e-156 554.3 298 100.0
BcaC08g43723 Brassica carinata HOM05D003774 ORTHO05D010174 9.1e-154 547.0 298 99.0
BolC6t36225H Brassica oleracea HOM05D003774 ORTHO05D010174 2.0e-153 545.8 298 98.7
A09p31890 Brassica napus HOM05D003774 ORTHO05D010174 1.7e-152 542.7 298 97.7
BraA09t38729Z Brassica rapa HOM05D003774 ORTHO05D010174 6.8e-141 504.2 276 97.1
BcaB07g33098 Brassica carinata HOM05D003774 ORTHO05D010174 1.5e-140 503.1 296 90.9
Sp1g30100 Schrenkiella parvula HOM05D003774 ORTHO05D010174 5.6e-135 484.6 297 88.9
AL1G50100 Arabidopsis lyrata HOM05D003774 ORTHO05D010174 1.5e-127 459.9 296 84.5
Thhalv10001819m.g Eutrema salsugineum HOM05D003774 ORTHO05D010174 5.6e-127 458.0 296 83.8
Carub.0347s0001 Capsella rubella HOM05D003774 ORTHO05D010174 6.4e-123 444.5 296 81.1
THA.LOC104816539 Tarenaya hassleriana HOM05D003774 ORTHO05D010174 1.0e-96 357.5 270 69.3
AT1G35340 Arabidopsis thaliana HOM05D003774 ORTHO05D010174 2.8e-94 349.4 211 87.2
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 4.2e-90 335.5 273 68.9
Cfa012970 Carpinus fangiana HOM05D003774 ORTHO05D010174 2.5e-87 326.2 258 64.7
CiPaw.07G235600 Carya illinoinensis HOM05D003774 ORTHO05D010174 1.8e-85 320.1 271 62.0
Manes.18G106000 Manihot esculenta HOM05D003774 ORTHO05D010174 1.8e-85 320.1 283 59.7
Thecc.08G192700 Theobroma cacao HOM05D003774 ORTHO05D010174 2.0e-84 316.6 286 61.5
RcHm_v2.0_Chr7g0227131 Rosa chinensis HOM05D003774 ORTHO05D010174 1.9e-82 310.1 261 64.0
Ciclev10003535m.g Citrus clementina HOM05D003774 ORTHO05D010174 3.2e-82 309.3 264 63.6
PGSC0003DMG400026729 Solanum tuberosum HOM05D003774 ORTHO05D010174 7.2e-82 308.1 274 59.9
FAN08G2588 Fragaria x ananassa HOM05D003774 ORTHO05D010174 9.3e-82 307.8 260 63.1
FvH4_5g31600 Fragaria vesca HOM05D003774 ORTHO05D010174 3.6e-81 305.8 258 63.2
Nitab4.5_0005616g0030 Nicotiana tabacum HOM05D003774 ORTHO05D010174 1.8e-80 303.5 257 61.9
Eucgr.F02989 Eucalyptus grandis HOM05D003774 ORTHO05D010174 2.3e-80 303.1 269 62.8
Nitab4.5_0001463g0060 Nicotiana tabacum HOM05D003774 ORTHO05D010174 5.1e-80 302.0 257 61.5
Prupe.1G555700 Prunus persica HOM05D003774 ORTHO05D010174 6.7e-80 301.6 289 57.8
CANSAT25G1591 Cannabis sativa HOM05D003774 ORTHO05D010174 1.1e-79 300.8 251 62.5
FAN07G1602 Fragaria x ananassa HOM05D003774 ORTHO05D010174 1.1e-79 300.8 260 62.3
Solyc11g027830.2 Solanum lycopersicum HOM05D003774 ORTHO05D010174 1.1e-79 300.8 257 61.5
CAN.G1483.1 Capsicum annuum HOM05D003774 ORTHO05D010174 3.3e-79 299.3 257 60.7
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 3.3e-79 299.3 263 61.2
Atru.chr13.2372 Acer truncatum HOM05D003774 ORTHO05D010174 4.3e-79 298.9 258 62.0
Sopen11g022590 Solanum pennellii HOM05D003774 ORTHO05D010174 7.4e-79 298.1 261 60.9
PGR042G3332 Punica granatum HOM05D003774 ORTHO05D010174 2.2e-78 296.6 259 61.0
TWI14G1031 Tripterygium wilfordii HOM05D003774 ORTHO05D010174 2.2e-78 296.6 233 68.7
Peaxi162Scf00688g00424 Petunia axillaris HOM05D003774 ORTHO05D010174 4.1e-77 292.4 257 58.4
Haze_21314 Corylus avellana HOM05D003774 ORTHO05D010174 1.5e-76 290.4 317 53.3
PSO170G3079 Papaver somniferum HOM05D003774 ORTHO05D010174 4.5e-76 288.9 287 56.4
MD14G1036300 Malus domestica HOM05D003774 ORTHO05D010174 1.0e-75 287.7 247 62.3
PSO782G0406 Papaver somniferum HOM05D003774 ORTHO05D010174 1.3e-75 287.3 264 60.6
Migut.C01324 Erythranthe guttata HOM05D003774 ORTHO05D010174 3.8e-75 285.8 258 60.1
HanXRQChr02g0036571 Helianthus annuus HOM05D003774 ORTHO05D010174 6.5e-75 285.0 265 56.2
DCAR_017444 Daucus carota HOM05D003774 ORTHO05D010174 1.1e-74 284.3 248 59.7
Lsat_1_v5_gn_1_25800 Lactuca sativa HOM05D003774 ORTHO05D010174 1.1e-74 284.3 257 58.8
Cc00_g20990 Coffea canephora HOM05D003774 ORTHO05D010174 1.4e-74 283.9 243 62.6
CsaV3_5G040540 Cucumis sativus L. HOM05D003774 ORTHO05D010174 5.5e-74 282.0 248 60.9
Actinidia29409 Actinidia chinensis HOM05D003774 ORTHO05D010174 7.2e-74 281.6 247 63.2
MBI03_g45112_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 4.8e-70 268.9 270 58.1
GSVIVG01026088001 Vitis vinifera HOM05D003774 ORTHO05D010174 1.2e-68 264.2 219 62.6
Cpa.g.sc66.3 Carica papaya HOM05D003774 ORTHO05D010174 1.1e-66 257.7 210 64.8
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 5.5e-66 255.4 257 55.6
COL.COLO4_24648 Corchorus olitorius HOM05D003774 ORTHO05D010174 2.7e-65 253.1 235 59.6
Potri.013G105500 Populus trichocarpa HOM05D003774 ORTHO05D010174 7.9e-65 251.5 215 62.3
ClCG08G000190 Citrullus lanatus HOM05D003774 ORTHO05D010174 1.0e-64 251.1 278 52.2
MBI03_g46804_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 2.6e-60 236.5 233 57.9
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 7.7e-60 235.0 210 58.1
SEGI_18058 Sequoiadendron giganteum HOM05D003774 ORTHO05D010174 2.9e-59 233.0 248 52.0
MD04G1056900 Malus domestica HOM05D003774 ORTHO05D010174 1.5e-58 230.7 212 58.5
CARHR034170 Cardamine hirsuta HOM05D003774 ORTHO05D010174 7.2e-58 228.4 149 84.6
Zm00001eb169160 Zea mays HOM05D003774 ORTHO05D010174 2.7e-57 226.5 244 53.7
Oeu013897.1 Olea europaea HOM05D003774 ORTHO05D010174 4.4e-55 219.2 209 56.0
Pp3c18_9200 Physcomitrium patens HOM05D003774 ORTHO05D010174 1.1e-50 204.5 248 45.2
Mapoly0085s0045 Marchantia polymorpha HOM05D003774 ORTHO05D010174 2.6e-47 193.4 269 40.9
Dinv41759 Davidia involucrata HOM05D003774 ORTHO05D010174 1.9e-42 177.2 150 60.7
MELO3C022227.2 Cucumis melo HOM05D003774 ORTHO05D010174 2.0e-39 167.2 246 43.5
Rhsim11G0052800 Rhododendron simsii HOM05D003774 ORTHO05D000166 4.0e-32 142.9 113 65.5
TAR628G1250 Trochodendron aralioides HOM05D003774 ORTHO05D010174 5.2e-32 142.5 121 64.5
MSTRG.1569 Avicennia marina HOM05D003774 ORTHO05D010174 2.4e-29 133.7 125 60.0
Lj7A284G37 Lonicera japonica HOM05D003774 ORTHO05D010174 7.8e-28 128.6 86 74.4
AagrBONN_evm.TU.Sc2ySwM_340.403 Anthoceros agrestis HOM05D000737 ORTHO05D000581 5.0e-27 125.9 233 34.8
FvH4_5g26640 Fragaria vesca HOM05D003774 ORTHO05D010174 3.6e-25 119.8 137 51.8
Os11g0219000 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D010174 1.0e-19 101.7 110 49.1
Lj7A284T38 Lonicera japonica HOM05D003774 ORTHO05D010174 3.9e-19 99.8 101 53.5
Cre16.g670500 Chlamydomonas reinhardtii HOM05D003774 ORTHO05D010174 3.5e-12 76.6 334 24.6
MCO03G373 Micromonas commoda HOM05D003774 ORTHO05D010174 1.5e-10 71.2 291 27.5
MD15G1405700 Malus domestica HOM05D003774 ORTHO05D010174 2.9e-06 57.0 147 31.3


User provided reference genes

Program Settings