Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43673 Brassica carinata HOM05D014824 ORTHO05D002245 8.4e-30 132.9 61 100.0
C06p10930 Brassica napus HOM05D014824 ORTHO05D002245 8.4e-30 132.9 61 100.0
BraSC56t46388Z Brassica rapa HOM05D014824 ORTHO05D002245 8.4e-30 132.9 61 100.0
BcaB07g33174 Brassica carinata HOM05D014824 ORTHO05D002245 1.6e-28 128.6 61 96.7
AL1G64310 Arabidopsis lyrata HOM05D014824 ORTHO05D002245 1.3e-22 109.0 63 81.0
Thhalv10011923m.g Eutrema salsugineum HOM05D014824 ORTHO05D002245 5.5e-21 103.6 62 80.6
Carub.0001s4465 Capsella rubella HOM05D014824 ORTHO05D002245 4.6e-20 100.5 61 80.3
CARHR045780 Cardamine hirsuta HOM05D014824 ORTHO05D002245 1.0e-19 99.4 61 77.0
THA.LOC104815717 Tarenaya hassleriana HOM05D014824 ORTHO05D002245 6.5e-14 80.1 64 60.9
AT1G56060 Arabidopsis thaliana HOM05D014824 ORTHO05D002245 1.8e-11 72.0 47 72.3
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 4.8e-09 63.9 57 54.4
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 6.3e-09 63.5 53 58.5
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.8e-08 62.0 57 56.1
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.8e-08 62.0 57 56.1
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 1.8e-08 62.0 57 56.1
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 3.1e-08 61.2 58 56.9
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 4.1e-08 60.8 57 56.1
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 4.1e-08 60.8 57 56.1
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 5.3e-08 60.5 57 56.1
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 5.3e-08 60.5 57 56.1
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 5.3e-08 60.5 57 56.1
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 6.9e-08 60.1 59 55.9
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 6.9e-08 60.1 57 56.1
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 6.9e-08 60.1 57 56.1
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 1.2e-07 59.3 59 55.9
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 1.5e-07 58.9 57 56.1
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 3.4e-07 57.8 58 51.7
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 3.4e-07 57.8 58 51.7
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 4.5e-07 57.4 57 56.1
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 1.0e-06 56.2 58 50.0
Lalb_Chr20g0108741 Lupinus albus HOM05D002385 ORTHO05D002245 1.0e-06 56.2 55 54.5
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 1.3e-06 55.8 56 53.6
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 1.3e-06 55.8 56 53.6
Aa31LG10G180 Aethionema arabicum HOM05D012834 ORTHO05D012142 1.7e-06 55.5 40 67.5
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 1.7e-06 55.5 56 51.8
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 1.7e-06 55.5 50 58.0
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 1.7e-06 55.5 50 58.0
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 1.7e-06 55.5 50 58.0
CARHR004830 Cardamine hirsuta HOM05D002385 ORTHO05D002245 1.7e-06 55.5 58 51.7
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 2.2e-06 55.1 56 51.8
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.2e-06 55.1 56 46.4
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 2.2e-06 55.1 59 50.8
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 8.5e-06 53.1 53 49.1


User provided reference genes

Program Settings