Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 9.3e-137 490.3 273 100.0
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 9.3e-137 490.3 273 100.0
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 9.3e-137 490.3 273 100.0
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 4.9e-130 468.0 274 96.4
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 6.0e-128 461.1 274 96.0
BcaB07g33353 Brassica carinata HOM05D009851 ORTHO05D008654 2.3e-111 406.0 277 85.9
Sp1g39710 Schrenkiella parvula HOM05D009851 ORTHO05D008654 2.3e-103 379.4 285 77.9
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 3.5e-91 339.0 300 70.7
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 1.2e-86 323.9 302 71.2
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 2.0e-86 323.2 287 70.7
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 1.8e-76 290.0 305 64.6
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 5.4e-76 288.5 295 65.4
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 1.6e-43 180.6 285 53.3
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 9.6e-33 144.8 263 43.7
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 1.0e-26 124.8 250 41.2
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 1.1e-25 121.3 251 38.2
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.3e-24 117.9 265 44.9
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 8.1e-24 115.2 263 38.8
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 2.4e-23 113.6 265 44.5
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 5.3e-23 112.5 265 44.2
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 1.5e-22 110.9 256 44.9
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 2.0e-22 110.5 264 44.3
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 5.8e-22 109.0 257 35.8
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 5.5e-20 102.4 240 37.9
BcaB06g29549 Brassica carinata HOM05D009851 ORTHO05D008654 1.4e-15 87.8 259 33.2
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 1.8e-15 87.4 239 33.5
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 3.8e-13 79.7 287 35.5
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 6.5e-13 79.0 236 33.1
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 2.5e-12 77.0 238 31.9
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 3.2e-12 76.6 269 34.2
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 3.2e-12 76.6 259 32.0
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 9.3e-12 75.1 279 34.8
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 2.1e-11 73.9 94 58.5
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 2.1e-11 73.9 260 30.4
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 3.5e-11 73.2 262 29.8
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 4.6e-11 72.8 261 31.4
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 7.9e-11 72.0 262 32.1
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.3e-10 71.2 262 32.1
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 1.3e-10 71.2 262 32.1
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 5.1e-10 69.3 262 31.7
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 6.7e-10 68.9 274 34.7
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 4.3e-09 66.2 257 30.7
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.3e-08 64.7 238 31.1
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 1.3e-08 64.7 261 30.7
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 3.7e-08 63.2 254 35.0
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 4.8e-08 62.8 257 28.0
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 8.2e-08 62.0 243 30.5
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 1.4e-07 61.2 266 31.2
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 1.8e-07 60.8 248 34.3
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 6.9e-07 58.9 259 30.5
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 6.9e-07 58.9 268 32.8
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 9.0e-07 58.5 250 32.8
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 9.0e-07 58.5 66 50.0
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 1.2e-06 58.2 261 29.9
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 1.2e-06 58.2 82 47.6
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 2.6e-06 57.0 277 29.6
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 2.6e-06 57.0 261 30.7
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 2.6e-06 57.0 66 56.1
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 2.6e-06 57.0 246 29.3
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 7.7e-06 55.5 76 50.0


User provided reference genes

Program Settings