Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 2.8e-228 795.0 429 100.0
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 1.6e-215 752.7 415 98.6
BcaC08g43497 Brassica carinata HOM05D003240 ORTHO05D017503 8.9e-126 454.5 223 99.6
C06p44710 Brassica napus HOM05D003240 ORTHO05D017503 3.4e-117 426.0 223 93.3
BcaB02g07983 Brassica carinata HOM05D003240 ORTHO05D017503 7.3e-96 355.1 223 80.7
C07p46390 Brassica napus HOM05D003240 ORTHO05D016738 2.4e-70 270.4 218 64.2
BolC7t45157H Brassica oleracea HOM05D003240 ORTHO05D016738 2.4e-70 270.4 218 64.2
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 5.0e-68 262.7 130 100.0
C01p00460 Brassica napus HOM05D003240 ORTHO05D016738 9.4e-67 258.5 220 61.8
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 4.6e-66 256.1 130 97.7
A08p21510 Brassica napus HOM05D003240 ORTHO05D016738 6.1e-66 255.8 220 60.9
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 6.1e-66 255.8 130 96.9
BraA08t34100Z Brassica rapa HOM05D003240 ORTHO05D016738 6.1e-66 255.8 220 60.9
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.2e-58 231.5 130 88.5
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 1.6e-58 231.1 130 86.9
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 8.8e-57 225.3 131 85.5
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 6.3e-55 219.2 132 83.3
BcaB06g27605 Brassica carinata HOM05D003240 ORTHO05D017503 1.1e-54 218.4 223 56.1
A07p11540 Brassica napus HOM05D003240 ORTHO05D019967 3.1e-54 216.9 217 59.4
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 5.3e-54 216.1 131 82.4
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 5.3e-54 216.1 132 84.1
BraA03t12127Z Brassica rapa HOM05D003240 ORTHO05D019967 9.1e-54 215.3 217 59.4
BcaC03g16736 Brassica carinata HOM05D003240 ORTHO05D039537 4.5e-53 213.0 174 62.6
C02p46100 Brassica napus HOM05D003240 ORTHO05D039537 4.5e-53 213.0 174 62.1
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 2.9e-52 210.3 131 80.9
BolC3t17954H Brassica oleracea HOM05D003240 ORTHO05D016738 6.5e-52 209.1 174 60.3
BolC8t51497H Brassica oleracea HOM05D003240 ORTHO05D016738 1.9e-51 207.6 174 60.3
BcaC07g36950 Brassica carinata HOM05D003240 ORTHO05D017503 4.2e-51 206.5 174 59.8
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 5.5e-51 206.1 131 78.6
C03p42330 Brassica napus HOM05D003240 ORTHO05D019967 5.5e-51 206.1 217 57.1
C05p19960 Brassica napus HOM05D003240 ORTHO05D019967 1.6e-50 204.5 217 57.6
BolC5t30694H Brassica oleracea HOM05D003240 ORTHO05D019967 1.6e-50 204.5 217 57.6
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 2.3e-49 200.7 131 77.1
BcaC08g46075 Brassica carinata HOM05D003240 ORTHO05D019967 1.5e-48 198.0 219 55.7
BolC6t39036H Brassica oleracea HOM05D003240 ORTHO05D019967 7.4e-48 195.7 217 55.8
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 2.8e-47 193.7 131 74.8
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 7.0e-46 189.1 130 74.6
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 7.2e-43 179.1 131 68.7
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 8.0e-42 175.6 130 70.8
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 3.4e-40 170.2 117 71.8
BcaNung01267 Brassica carinata HOM05D003240 ORTHO05D016738 2.0e-37 161.0 213 47.4
C06p39430 Brassica napus HOM05D003240 ORTHO05D017503 2.9e-36 157.1 169 58.0
C08p00720 Brassica napus HOM05D003240 ORTHO05D016738 6.8e-33 146.0 120 60.8
BraA03t14192Z Brassica rapa HOM05D003240 ORTHO05D017503 1.2e-32 145.2 105 74.3
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 5.7e-32 142.9 130 56.9
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 2.5e-27 127.5 130 51.5
C06p51580 Brassica napus HOM05D003240 ORTHO05D017503 5.5e-27 126.3 145 55.2
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 7.5e-24 115.9 123 50.4
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 1.4e-22 111.7 117 54.7
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 5.4e-22 109.8 123 48.8
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 5.4e-22 109.8 122 48.4
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 7.0e-22 109.4 125 48.0
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 7.0e-22 109.4 126 47.6
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 2.7e-21 107.5 124 49.2
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 5.9e-21 106.3 116 49.1
BcaC01g01758 Brassica carinata HOM05D003240 ORTHO05D032152 7.8e-21 105.9 242 35.1
BcaC08g47278 Brassica carinata HOM05D003240 ORTHO05D017535 1.0e-20 105.5 249 34.9
BolC7t42862H Brassica oleracea HOM05D003240 ORTHO05D017535 1.3e-20 105.1 253 35.2
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 1.7e-20 104.8 88 58.0
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 2.3e-20 104.4 120 48.3
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 3.9e-20 103.6 124 46.0
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 5.0e-20 103.2 123 47.2
BcaNung03344 Brassica carinata HOM05D003240 ORTHO05D017535 6.6e-20 102.8 253 34.8
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 8.6e-20 102.4 126 45.2
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.1e-19 102.1 122 44.3
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 1.1e-19 102.1 119 46.2
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.5e-19 101.7 122 44.3
C06p50180 Brassica napus HOM05D003240 ORTHO05D017535 1.9e-19 101.3 250 34.8
BolC6t40058H Brassica oleracea HOM05D003240 ORTHO05D017535 1.9e-19 101.3 250 34.8
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 1.9e-19 101.3 121 46.3
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.9e-19 101.3 122 44.3
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 2.5e-19 100.9 122 45.1
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 3.3e-19 100.5 88 55.7
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 4.3e-19 100.1 129 43.4
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 4.3e-19 100.1 122 45.1
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 5.6e-19 99.8 119 45.4
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 5.6e-19 99.8 123 45.5
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 1.2e-18 98.6 123 43.1
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 1.6e-18 98.2 124 44.4
BraA03t12219Z Brassica rapa HOM05D003240 ORTHO05D017535 2.1e-18 97.8 249 33.7
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 2.1e-18 97.8 122 44.3
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.1e-18 97.8 125 44.8
BcaC07g36928 Brassica carinata HOM05D003240 ORTHO05D024027 4.7e-18 96.7 258 34.5
A08p33410 Brassica napus HOM05D003240 ORTHO05D017535 4.7e-18 96.7 249 33.7
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 6.2e-18 96.3 124 46.8
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 6.2e-18 96.3 126 39.7
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 1.0e-17 95.5 125 46.4
BcaC02g08188 Brassica carinata HOM05D003240 ORTHO05D017535 1.0e-17 95.5 247 33.2
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 1.0e-17 95.5 121 45.5
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 2.3e-17 94.4 119 43.7
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 4.0e-17 93.6 91 52.7
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 4.0e-17 93.6 120 43.3
BcaC09g47943 Brassica carinata HOM05D003240 ORTHO05D021783 5.2e-17 93.2 200 35.5
BraA02t06117Z Brassica rapa HOM05D003240 ORTHO05D019881 5.2e-17 93.2 255 34.1
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 5.2e-17 93.2 118 43.2
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 5.2e-17 93.2 131 43.5
C07p62190 Brassica napus HOM05D003240 ORTHO05D019881 6.8e-17 92.8 258 34.9
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 6.8e-17 92.8 118 43.2
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 6.8e-17 92.8 118 43.2
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 8.9e-17 92.4 118 43.2
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 8.9e-17 92.4 118 43.2
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 8.9e-17 92.4 118 43.2
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 8.9e-17 92.4 117 44.4
BcaC07g41988 Brassica carinata HOM05D003240 ORTHO05D021783 1.2e-16 92.0 200 35.0
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 1.2e-16 92.0 111 45.0
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 1.5e-16 91.7 127 40.9
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.0e-16 91.3 113 41.6
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 2.0e-16 91.3 72 58.3
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.6e-16 90.9 118 43.2
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 3.4e-16 90.5 127 41.7
C03p92080 Brassica napus HOM05D003240 ORTHO05D024027 4.4e-16 90.1 265 33.2
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 4.4e-16 90.1 84 53.6
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 4.4e-16 90.1 122 42.6
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 5.8e-16 89.7 86 51.2
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 7.5e-16 89.4 56 66.1
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 9.8e-16 89.0 123 40.7
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 1.3e-15 88.6 112 43.8
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 1.7e-15 88.2 122 39.3
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 1.7e-15 88.2 120 42.5
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.2e-15 87.8 119 42.9
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.7e-15 87.0 122 46.7
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 3.7e-15 87.0 126 41.3
BcaC08g43627 Brassica carinata HOM05D010232 ORTHO05D090808 4.9e-15 86.7 197 38.1
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 6.4e-15 86.3 116 41.4
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 6.4e-15 86.3 123 40.7
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 8.3e-15 85.9 131 38.9
BcaC03g18230 Brassica carinata HOM05D003240 ORTHO05D024027 1.1e-14 85.5 254 33.5
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.4e-14 85.1 90 51.1
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 1.9e-14 84.7 128 40.6
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.9e-14 84.7 124 38.7
C04p42100 Brassica napus HOM05D003240 ORTHO05D099985 9.2e-14 82.4 265 30.9
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 9.2e-14 82.4 122 41.8
A10p20120 Brassica napus HOM05D003240 ORTHO05D032928 1.6e-13 81.6 256 31.2
BcaC03g17650 Brassica carinata HOM05D000109 ORTHO05D000210 2.0e-13 81.3 201 34.8
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 2.0e-13 81.3 126 38.9
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 3.5e-13 80.5 126 39.7
BcaC06g31611 Brassica carinata HOM05D003240 ORTHO05D091789 6.0e-13 79.7 204 35.3
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 7.8e-13 79.3 58 56.9
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 1.7e-12 78.2 68 52.9
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 2.3e-12 77.8 115 40.0
A09p11060 Brassica napus HOM05D003240 ORTHO05D019881 3.9e-12 77.0 163 40.5
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 6.6e-12 76.3 113 38.1
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 1.1e-11 75.5 78 50.0
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 1.5e-11 75.1 97 42.3
C02p63910 Brassica napus HOM05D003240 ORTHO05D027650 1.5e-11 75.1 208 36.5
BcaC02g12174 Brassica carinata HOM05D003240 ORTHO05D094064 2.5e-11 74.3 180 38.3
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 4.3e-11 73.6 67 50.7
BraA03t10651Z Brassica rapa HOM05D003240 ORTHO05D032928 7.3e-11 72.8 200 35.5
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 7.3e-11 72.8 60 55.0
C07p16840 Brassica napus HOM05D003240 ORTHO05D027650 1.6e-10 71.6 205 35.1
BcaC01g00646 Brassica carinata HOM05D003240 ORTHO05D027650 2.1e-10 71.2 200 36.5
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 2.1e-10 71.2 119 36.1
BcaC05g27248 Brassica carinata HOM05D010232 ORTHO05D023893 6.2e-10 69.7 261 29.1
BolC1t05880H Brassica oleracea HOM05D003240 ORTHO05D024027 6.2e-10 69.7 188 34.6
BolC8t49585H Brassica oleracea HOM05D003240 ORTHO05D024027 6.2e-10 69.7 188 34.6
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.4e-09 68.6 122 38.5
C02p52290 Brassica napus HOM05D003240 ORTHO05D101137 2.3e-09 67.8 181 35.9
A03p12700 Brassica napus HOM05D003240 ORTHO05D100875 4.0e-09 67.0 103 43.7
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 3.4e-08 63.9 63 42.9
C09p71790 Brassica napus HOM05D003240 ORTHO05D097945 4.9e-07 60.1 138 35.5
BcaC01g03048 Brassica carinata HOM05D006662 ORTHO05D008378 1.4e-06 58.5 46 60.9
BolC5t34528H Brassica oleracea HOM05D003240 ORTHO05D019881 1.4e-06 58.5 117 39.3
C07p43830 Brassica napus HOM05D003240 ORTHO05D101579 2.4e-06 57.8 114 41.2


User provided reference genes

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