Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 7.7e-55 216.9 106 100.0
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 7.7e-55 216.9 106 100.0
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 7.7e-55 216.9 106 100.0
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 7.2e-53 210.3 108 97.2
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 7.2e-53 210.3 108 97.2
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 1.3e-49 199.5 108 92.6
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 3.2e-45 184.9 108 85.2
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 2.1e-36 155.6 110 76.4
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 4.7e-36 154.5 101 80.2
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 4.6e-31 137.9 105 71.4
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 3.6e-28 128.3 104 66.3
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 3.6e-28 128.3 111 65.8
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 3.1e-27 125.2 104 63.5
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 5.2e-27 124.4 104 64.4
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 6.8e-27 124.0 109 60.6
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 1.5e-26 122.9 104 62.5
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 2.0e-26 122.5 104 64.4
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 2.0e-26 122.5 104 64.4
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 2.0e-26 122.5 104 64.4
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 2.6e-26 122.1 104 64.4
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 2.6e-26 122.1 104 64.4
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 3.4e-26 121.7 104 63.5
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 6.4e-25 117.5 101 64.4
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.9e-24 115.9 101 58.4
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 4.3e-21 104.8 104 58.7
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 2.1e-20 102.4 104 56.7
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 2.1e-20 102.4 104 56.7
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 2.1e-20 102.4 104 56.7
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.1e-16 90.1 94 56.4
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.4e-16 89.7 95 55.8
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 7.1e-16 87.4 113 50.4
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 1.6e-15 86.3 101 52.5
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 7.8e-15 84.0 109 47.7
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 1.0e-14 83.6 115 46.1
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 1.0e-14 83.6 87 55.2
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 1.3e-14 83.2 104 50.0
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 1.7e-14 82.8 104 51.9
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 3.0e-14 82.0 78 60.3
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 3.9e-14 81.6 105 49.5
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 3.9e-14 81.6 79 55.7
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 5.1e-14 81.3 87 52.9
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 5.1e-14 81.3 87 52.9
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 5.1e-14 81.3 102 47.1
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 6.6e-14 80.9 87 52.9
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 8.6e-14 80.5 79 55.7
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.1e-13 80.1 87 51.7
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 1.1e-13 80.1 91 53.8
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 1.5e-13 79.7 80 53.8
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 4.3e-13 78.2 110 47.3
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 4.3e-13 78.2 101 48.5
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 5.6e-13 77.8 76 57.9
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 5.6e-13 77.8 112 42.9
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 5.6e-13 77.8 112 42.9
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 7.3e-13 77.4 75 57.3
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 9.5e-13 77.0 93 47.3
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 9.5e-13 77.0 75 57.3
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 9.5e-13 77.0 92 52.2
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 1.2e-12 76.6 100 48.0
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 1.6e-12 76.3 70 58.6
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 1.6e-12 76.3 77 55.8
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.6e-12 76.3 112 42.9
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 2.8e-12 75.5 77 55.8
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 6.2e-12 74.3 81 54.3
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 4.0e-11 71.6 70 52.9
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 4.0e-11 71.6 70 55.7
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 4.0e-11 71.6 68 55.9
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 8.9e-11 70.5 75 56.0
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 1.5e-10 69.7 101 46.5
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 1.6e-07 59.7 77 46.8
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 1.6e-07 59.7 86 46.5
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 2.3e-06 55.8 112 41.1
MBI02_g19254_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 3.0e-06 55.5 90 43.3


User provided reference genes

Program Settings