Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p08300 Brassica napus HOM05D000286 ORTHO05D042546 2.1e-45 185.3 88 100.0
BolC6t35911H Brassica oleracea HOM05D000286 ORTHO05D042546 2.1e-45 185.3 88 100.0
BcaC08g43451 Brassica carinata HOM05D000286 ORTHO05D000170 6.9e-33 143.7 81 86.4
A06p01640 Brassica napus HOM05D000286 ORTHO05D000170 6.9e-33 143.7 81 86.4
C06p08210 Brassica napus HOM05D000286 ORTHO05D000170 6.9e-33 143.7 81 86.4
C06p08230 Brassica napus HOM05D000286 ORTHO05D000170 6.9e-33 143.7 81 86.4
C06p08250 Brassica napus HOM05D000286 ORTHO05D000170 6.9e-33 143.7 81 86.4
BolC6t35902H Brassica oleracea HOM05D000286 ORTHO05D000170 6.9e-33 143.7 81 86.4
BolC6t35906H Brassica oleracea HOM05D000286 ORTHO05D000170 6.9e-33 143.7 81 86.4
BraA06t23382Z Brassica rapa HOM05D000286 ORTHO05D000170 6.9e-33 143.7 81 86.4
Carub.0001s4185 Capsella rubella HOM05D000286 ORTHO05D000170 6.4e-31 137.1 81 82.7
Aa31LG10G2280 Aethionema arabicum HOM05D000286 ORTHO05D000170 8.4e-31 136.7 80 83.8
AL1G61080 Arabidopsis lyrata HOM05D000286 ORTHO05D000170 1.4e-30 136.0 81 81.5
Sp1g39330 Schrenkiella parvula HOM05D000286 ORTHO05D000170 2.5e-30 135.2 81 81.5
AT1G52760 Arabidopsis thaliana HOM05D000286 ORTHO05D000170 5.5e-30 134.0 81 80.2
Lalb_Chr07g0180701 Lupinus albus HOM05D000286 ORTHO05D000170 5.5e-30 134.0 80 81.2
SGA_v2.0_scaffold37G14798 Striga asiatica HOM05D000286 ORTHO05D000170 5.5e-30 134.0 80 81.2
Psat4g013480 Pisum sativum HOM05D000286 ORTHO05D000170 9.3e-30 133.3 80 81.2
Medtr4g127220 Medicago truncatula HOM05D000286 ORTHO05D000170 1.2e-29 132.9 80 81.2
TPR.G5398 Trifolium pratense HOM05D000286 ORTHO05D000170 1.6e-29 132.5 80 80.0
THA.LOC104810496 Tarenaya hassleriana HOM05D000286 ORTHO05D000170 2.1e-29 132.1 80 81.2
Thhalv10011645m.g Eutrema salsugineum HOM05D000286 ORTHO05D000170 2.7e-29 131.7 81 79.0
Glyma.13G101400 Glycine max HOM05D000286 ORTHO05D000170 2.7e-29 131.7 80 78.8
Rhsim08G0217500 Rhododendron simsii HOM05D000286 ORTHO05D000170 2.7e-29 131.7 80 80.0
Sabra01G0137300 Salix brachista HOM05D000286 ORTHO05D000170 2.7e-29 131.7 80 80.0
CARHR042920 Cardamine hirsuta HOM05D000286 ORTHO05D000170 3.5e-29 131.3 81 79.0
Nitab4.5_0000410g0380 Nicotiana tabacum HOM05D000286 ORTHO05D000170 3.5e-29 131.3 80 80.0
Phvul.003G140500 Phaseolus vulgaris HOM05D000286 ORTHO05D000170 6.0e-29 130.6 80 78.8
VMungo1215G3197 Vigna mungo HOM05D000286 ORTHO05D000170 6.0e-29 130.6 80 78.8
MSTRG.22717 Avicennia marina HOM05D000286 ORTHO05D000170 7.9e-29 130.2 80 78.8
vmacro18951 Vaccinium macrocarpon HOM05D000286 ORTHO05D000170 7.9e-29 130.2 80 78.8
PSO478G0729 Papaver somniferum HOM05D000286 ORTHO05D000170 1.8e-28 129.0 80 77.5
RcHm_v2.0_Chr2g0137021 Rosa chinensis HOM05D000286 ORTHO05D000170 2.3e-28 128.6 80 77.5
Oeu014851.1 Olea europaea HOM05D000286 ORTHO05D000170 3.0e-28 128.3 80 78.8
Potri.003G059200 Populus trichocarpa HOM05D000286 ORTHO05D000170 3.0e-28 128.3 80 77.5
SalBow2G0586 Salvia bowleyana HOM05D000286 ORTHO05D000170 3.0e-28 128.3 80 77.5
Solyc03g119980.3 Solanum lycopersicum HOM05D000286 ORTHO05D000170 3.0e-28 128.3 80 78.8
Sopen03g038860 Solanum pennellii HOM05D000286 ORTHO05D000170 3.0e-28 128.3 80 78.8
CSS0016563 Camellia sinensis var. sinensis HOM05D000286 ORTHO05D000170 3.9e-28 127.9 80 77.5
PSO017G5331 Papaver somniferum HOM05D000286 ORTHO05D000170 3.9e-28 127.9 80 76.2
Potri.001G175000 Populus trichocarpa HOM05D000286 ORTHO05D000170 3.9e-28 127.9 80 77.5
Sabra03G0033800 Salix brachista HOM05D000286 ORTHO05D000170 5.1e-28 127.5 80 76.2
Ciclev10026080m.g Citrus clementina HOM05D000286 ORTHO05D000170 6.7e-28 127.1 80 76.2
Lj4g0017316 Lotus japonicus HOM05D000286 ORTHO05D000170 6.7e-28 127.1 80 72.5
PGSC0003DMG400005611 Solanum tuberosum HOM05D000286 ORTHO05D000170 6.7e-28 127.1 80 77.5
CAN.G438.92 Capsicum annuum HOM05D000286 ORTHO05D000170 8.7e-28 126.7 80 76.2
Atru.chr1.3160 Acer truncatum HOM05D000286 ORTHO05D000170 1.1e-27 126.3 80 76.2
Ca_21259_v3 Cicer arietinum L. HOM05D000286 ORTHO05D000170 1.1e-27 126.3 80 75.0
Aqoxy7G01979 Aquilegia oxysepala HOM05D000286 ORTHO05D000170 1.5e-27 125.9 80 73.8
Oeu000437.1 Olea europaea HOM05D000286 ORTHO05D000170 1.5e-27 125.9 80 77.5
Actinidia01776 Actinidia chinensis HOM05D000286 ORTHO05D000170 1.9e-27 125.6 80 75.0
Hma1.2p1_0317F.1_g123380 Hydrangea macrophylla HOM05D000286 ORTHO05D000170 1.9e-27 125.6 80 75.0
Hma1.2p1_1577F.1_g291715 Hydrangea macrophylla HOM05D000286 ORTHO05D000170 1.9e-27 125.6 80 75.0
ClCG07G012890 Citrullus lanatus HOM05D000286 ORTHO05D000170 2.5e-27 125.2 80 76.2
ClCG10G010120 Citrullus lanatus HOM05D000286 ORTHO05D000170 2.5e-27 125.2 80 76.2
MELO3C012939.2 Cucumis melo HOM05D000286 ORTHO05D000170 2.5e-27 125.2 80 76.2
FAN02G3730 Fragaria x ananassa HOM05D000286 ORTHO05D000170 2.5e-27 125.2 81 76.5
Carub.0001s4184 Capsella rubella HOM05D000286 ORTHO05D000170 3.3e-27 124.8 80 73.8
CiPaw.01G242900 Carya illinoinensis HOM05D000286 ORTHO05D000170 4.3e-27 124.4 80 73.8
FvH4_6g30610 Fragaria vesca HOM05D000286 ORTHO05D000170 4.3e-27 124.4 81 76.5
Thecc.06G077100 Theobroma cacao HOM05D000286 ORTHO05D000170 4.3e-27 124.4 80 75.0
DCAR_016250 Daucus carota HOM05D000286 ORTHO05D000170 5.6e-27 124.0 80 72.5
FAN14G4273 Fragaria x ananassa HOM05D000286 ORTHO05D000170 5.6e-27 124.0 81 76.5
Prupe.5G109300 Prunus persica HOM05D000286 ORTHO05D000170 9.6e-27 123.2 80 73.8
Dinv38079 Davidia involucrata HOM05D000286 ORTHO05D000170 1.6e-26 122.5 80 75.0
Eucgr.F02557 Eucalyptus grandis HOM05D000286 ORTHO05D000170 2.1e-26 122.1 80 72.5
HanXRQChr04g0096821 Helianthus annuus HOM05D000286 ORTHO05D000170 2.1e-26 122.1 81 74.1
CANSAT56G0947 Cannabis sativa HOM05D000286 ORTHO05D000170 2.8e-26 121.7 80 72.5
Cc04_g03820 Coffea canephora HOM05D000286 ORTHO05D000170 2.8e-26 121.7 80 72.5
Dinv30553 Davidia involucrata HOM05D002980 ORTHO05D003421 2.8e-26 121.7 81 71.6
Gohir.A02G124500 Gossypium hirsutum HOM05D000286 ORTHO05D000170 2.8e-26 121.7 80 72.5
TWI18G0004 Tripterygium wilfordii HOM05D000286 ORTHO05D000170 2.8e-26 121.7 80 73.8
Cpa.g.c40446 Carica papaya HOM05D000286 ORTHO05D000170 3.7e-26 121.3 80 72.5
ECA247G3340 Erigeron canadensis HOM05D000286 ORTHO05D000170 3.7e-26 121.3 81 72.8
Gohir.D03G065200 Gossypium hirsutum HOM05D000286 ORTHO05D000170 3.7e-26 121.3 80 72.5
Gorai.002G057200 Gossypium raimondii HOM05D000286 ORTHO05D000170 3.7e-26 121.3 80 72.5
Lsat_1_v5_gn_1_33740 Lactuca sativa HOM05D000286 ORTHO05D000170 3.7e-26 121.3 81 72.8
TAR626G1104 Trochodendron aralioides HOM05D000286 ORTHO05D000170 3.7e-26 121.3 81 70.4
CDE07G0307 Ceratophyllum demersum HOM05D000286 ORTHO05D000170 4.8e-26 120.9 80 73.8
FAN05G2115 Fragaria x ananassa HOM05D000286 ORTHO05D000170 4.8e-26 120.9 81 72.8
Actinidia15811 Actinidia chinensis HOM05D000286 ORTHO05D000170 6.2e-26 120.6 80 73.8
DCAR_021325 Daucus carota HOM05D000286 ORTHO05D000170 6.2e-26 120.6 80 68.8
Manes.12G157800 Manihot esculenta HOM05D000286 ORTHO05D000170 8.2e-26 120.2 80 73.8
FAN09G4187 Fragaria x ananassa HOM05D000286 ORTHO05D000170 1.1e-25 119.8 81 71.6
Lj9A504G55 Lonicera japonica HOM05D000286 ORTHO05D000170 1.4e-25 119.4 81 69.1
Lj5A66T62 Lonicera japonica HOM05D000286 ORTHO05D000170 1.8e-25 119.0 80 71.2
MBI04_g33820_MAGBIO Magnolia biondii HOM05D000286 ORTHO05D000170 1.8e-25 119.0 80 70.0
Cfa002028 Carpinus fangiana HOM05D000286 ORTHO05D000170 2.4e-25 118.6 80 70.0
Haze_16494 Corylus avellana HOM05D000286 ORTHO05D000170 2.4e-25 118.6 80 70.0
Haze_16496 Corylus avellana HOM05D000286 ORTHO05D000170 2.4e-25 118.6 80 70.0
CsaV3_3G026650 Cucumis sativus L. HOM05D000286 ORTHO05D000170 3.1e-25 118.2 80 72.5
QL05p027042 Quercus lobata HOM05D000286 ORTHO05D000170 3.1e-25 118.2 80 70.0
Sed0016976 Sechium edule HOM05D000286 ORTHO05D000170 3.1e-25 118.2 80 72.5
PGR102G2547 Punica granatum HOM05D000286 ORTHO05D000170 4.0e-25 117.9 80 71.2
Sc10g0007160 Simmondsia chinensis HOM05D000286 ORTHO05D000170 6.9e-25 117.1 81 72.8
Sc10g0007230 Simmondsia chinensis HOM05D000286 ORTHO05D000170 6.9e-25 117.1 81 72.8
Sc10g0007560 Simmondsia chinensis HOM05D000286 ORTHO05D000170 6.9e-25 117.1 81 72.8
COL.COLO4_12864 Corchorus olitorius HOM05D000286 ORTHO05D000170 1.5e-24 115.9 79 70.9
ECA234G4253 Erigeron canadensis HOM05D000286 ORTHO05D000170 2.6e-24 115.2 81 69.1
Lsat_1_v5_gn_5_132980 Lactuca sativa HOM05D000286 ORTHO05D000170 1.3e-23 112.8 81 66.7
HanXRQChr16g0504241 Helianthus annuus HOM05D000286 ORTHO05D000170 2.2e-23 112.1 81 65.4
Peaxi162Scf00034g00114 Petunia axillaris HOM05D000286 ORTHO05D000170 2.2e-23 112.1 80 67.5
Lsat_1_v5_gn_5_132840 Lactuca sativa HOM05D000286 ORTHO05D000170 4.2e-22 107.8 81 60.5
HPP92_003645 Vanilla planifolia HOM05D000286 ORTHO05D000170 5.5e-22 107.5 80 62.5
ECA234G3427 Erigeron canadensis HOM05D000286 ORTHO05D000170 2.1e-21 105.5 81 60.5
SEGI_36645 Sequoiadendron giganteum HOM05D000286 ORTHO05D000170 3.5e-21 104.8 80 70.0
ATR0051G067 Amborella trichopoda HOM05D000286 ORTHO05D000170 4.6e-21 104.4 80 65.0
BcaC08g44016 Brassica carinata HOM05D000286 ORTHO05D000170 6.7e-20 100.5 64 75.0
C06p14280 Brassica napus HOM05D000286 ORTHO05D000170 6.7e-20 100.5 64 75.0
BolC6t36603H Brassica oleracea HOM05D000286 ORTHO05D000170 6.7e-20 100.5 64 75.0
HPP92_003631 Vanilla planifolia HOM05D000286 ORTHO05D000170 3.3e-19 98.2 78 59.0
DCAR_025466 Daucus carota HOM05D000286 ORTHO05D000170 5.7e-19 97.4 80 57.5
CDE06G0552 Ceratophyllum demersum HOM05D000286 ORTHO05D000170 1.6e-18 95.9 59 79.7
HanXRQChr10g0304561 Helianthus annuus HOM05D000286 ORTHO05D000170 1.6e-18 95.9 81 56.8
Os02g0207900 Oryza sativa ssp. japonica HOM05D000286 ORTHO05D000170 1.4e-17 92.8 81 54.3
Lsat_1_v5_gn_5_133000 Lactuca sativa HOM05D000286 ORTHO05D000170 3.1e-17 91.7 81 55.6
GSVIVG01017214001 Vitis vinifera HOM05D000286 ORTHO05D000170 5.3e-17 90.9 61 70.5
ECA234G0617 Erigeron canadensis HOM05D000286 ORTHO05D000170 1.0e-15 86.7 81 50.6
Peaxi162Scf00015g00527 Petunia axillaris HOM05D000286 ORTHO05D000170 1.0e-15 86.7 80 60.0
SMO196G0208 Selaginella moellendorffii HOM05D000286 ORTHO05D000170 6.5e-15 84.0 80 53.8
Actinidia15812 Actinidia chinensis HOM05D000286 ORTHO05D000170 3.2e-14 81.6 85 55.3
Nitab4.5_0010099g0010 Nicotiana tabacum HOM05D005000 ORTHO05D000170 6.7e-12 73.9 41 82.9
BcaC08g43452 Brassica carinata HOM05D000286 ORTHO05D000170 8.8e-12 73.6 40 85.0
Glyma.17G058300 Glycine max HOM05D000286 ORTHO05D000170 3.3e-11 71.6 46 71.7
A05p18790 Brassica napus HOM05D000286 ORTHO05D000170 6.9e-09 63.9 77 50.6
BraA05t20776Z Brassica rapa HOM05D000286 ORTHO05D000170 6.9e-09 63.9 77 50.6
Nitab4.5_0022569g0010 Nicotiana tabacum HOM05D000286 ORTHO05D000170 3.8e-07 58.2 48 60.4
MD17G1201900 Malus domestica HOM05D000286 ORTHO05D000170 1.1e-06 56.6 81 40.7
HanXRQChr10g0304541 Helianthus annuus HOM05D000286 ORTHO05D000170 7.2e-06 53.9 64 45.3


User provided reference genes

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