Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p08260 Brassica napus HOM05D037424 ORTHO05D040941 7.9e-55 216.9 109 100.0
BolC8t50938H Brassica oleracea HOM05D000194 ORTHO05D000069 9.8e-21 103.6 99 62.6
BcaC07g40337 Brassica carinata HOM05D000194 ORTHO05D000069 1.7e-20 102.8 94 64.9
C08p33390 Brassica napus HOM05D000194 ORTHO05D000069 6.3e-20 100.9 94 63.8
BraA09t40517Z Brassica rapa HOM05D000194 ORTHO05D000069 6.3e-20 100.9 101 60.4
A09p50690 Brassica napus HOM05D000194 ORTHO05D000069 9.2e-19 97.1 93 63.4
Sp5g04890 Schrenkiella parvula HOM05D000194 ORTHO05D000069 2.0e-18 95.9 114 53.5
BcaC07g40157 Brassica carinata HOM05D000194 ORTHO05D000069 3.5e-18 95.1 96 61.5
AL5G39470 Arabidopsis lyrata HOM05D000194 ORTHO05D000069 2.3e-17 92.4 110 53.6
CARHR168130 Cardamine hirsuta HOM05D000194 ORTHO05D000069 2.3e-17 92.4 105 54.3
Thhalv10006040m.g Eutrema salsugineum HOM05D000194 ORTHO05D000069 2.3e-17 92.4 110 54.5
AT3G57800 Arabidopsis thaliana HOM05D000194 ORTHO05D000069 1.5e-16 89.7 110 52.7
BolC6t35903H Brassica oleracea HOM05D037424 ORTHO05D040941 1.9e-16 89.4 66 74.2
Aa31LG1G23990 Aethionema arabicum HOM05D000194 ORTHO05D000069 2.8e-15 85.5 108 50.9
BcaB02g08293 Brassica carinata HOM05D000194 ORTHO05D000069 6.1e-15 84.3 96 54.2
Carub.0005s2466 Capsella rubella HOM05D000194 ORTHO05D000069 6.1e-15 84.3 102 53.9
BcaC02g09962 Brassica carinata HOM05D000194 ORTHO05D000069 1.4e-14 83.2 95 54.7
A04p02900 Brassica napus HOM05D000194 ORTHO05D000069 1.4e-14 83.2 95 54.7
BolC4t25017H Brassica oleracea HOM05D000194 ORTHO05D000069 1.4e-14 83.2 95 54.7
BraA04t16013Z Brassica rapa HOM05D000194 ORTHO05D000069 1.4e-14 83.2 95 54.7
C04p34560 Brassica napus HOM05D000194 ORTHO05D000069 5.2e-14 81.3 95 53.7
C06p24830 Brassica napus HOM05D000194 ORTHO05D000069 2.6e-13 79.0 88 58.0
CANSAT80G1730 Cannabis sativa HOM05D000194 ORTHO05D000069 2.6e-13 79.0 110 48.2
AT2G42300 Arabidopsis thaliana HOM05D000194 ORTHO05D000069 4.4e-13 78.2 96 54.2
CARHR137340 Cardamine hirsuta HOM05D000194 ORTHO05D000069 5.8e-13 77.8 99 48.5
AL4G40660 Arabidopsis lyrata HOM05D000194 ORTHO05D000069 1.7e-12 76.3 101 50.5
Gohir.D11G331000 Gossypium hirsutum HOM05D000194 ORTHO05D000069 1.7e-12 76.3 106 46.2
Gorai.007G361700 Gossypium raimondii HOM05D000194 ORTHO05D000069 1.7e-12 76.3 106 46.2
THA.LOC104802378 Tarenaya hassleriana HOM05D000194 ORTHO05D000069 2.2e-12 75.9 113 45.1
Cpa.g.sc85.120 Carica papaya HOM05D000194 ORTHO05D000069 2.9e-12 75.5 114 44.7
CiPaw.09G033800 Carya illinoinensis HOM05D000194 ORTHO05D000069 2.9e-12 75.5 109 45.0
Sp4g24470 Schrenkiella parvula HOM05D000194 ORTHO05D000069 2.9e-12 75.5 102 51.0
Thecc.05G165300 Theobroma cacao HOM05D000194 ORTHO05D000069 2.9e-12 75.5 98 51.0
Gohir.D09G122100 Gossypium hirsutum HOM05D000194 ORTHO05D000069 6.4e-12 74.3 103 50.5
Gohir.A11G313800 Gossypium hirsutum HOM05D000194 ORTHO05D000069 1.1e-11 73.6 105 45.7
Aa31LG10G12540 Aethionema arabicum HOM05D000194 ORTHO05D000069 1.4e-11 73.2 107 45.8
BcaNung04398 Brassica carinata HOM05D000194 ORTHO05D000069 1.4e-11 73.2 98 53.1
Gohir.A01G195300 Gossypium hirsutum HOM05D000194 ORTHO05D000069 2.4e-11 72.4 106 48.1
Gorai.002G229100 Gossypium raimondii HOM05D000194 ORTHO05D000069 3.2e-11 72.0 106 47.2
Glyma.19G143900 Glycine max HOM05D000194 ORTHO05D000069 4.1e-11 71.6 112 44.6
Gohir.A09G125100 Gossypium hirsutum HOM05D000194 ORTHO05D000069 4.1e-11 71.6 103 49.5
Gohir.D01G185700 Gossypium hirsutum HOM05D000194 ORTHO05D000069 4.1e-11 71.6 106 47.2
Phvul.001G138200 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 4.1e-11 71.6 114 43.9
QL07p022241 Quercus lobata HOM05D000194 ORTHO05D000069 4.1e-11 71.6 101 45.5
VMungo1383G2350 Vigna mungo HOM05D000194 ORTHO05D000069 1.6e-10 69.7 115 42.6
Ca_08492_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 2.0e-10 69.3 112 43.8
Ca_30035_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 2.0e-10 69.3 112 43.8
Haze_19925 Corylus avellana HOM05D000194 ORTHO05D000069 2.0e-10 69.3 110 44.5
Glyma.03G141200 Glycine max HOM05D000194 ORTHO05D000069 2.0e-10 69.3 114 43.9
Potri.016G051100 Populus trichocarpa HOM05D000194 ORTHO05D000069 2.7e-10 68.9 116 46.6
Cfa016880 Carpinus fangiana HOM05D000194 ORTHO05D000069 3.5e-10 68.6 110 42.7
CiPaw.10G029500 Carya illinoinensis HOM05D000194 ORTHO05D000069 3.5e-10 68.6 109 45.0
Carub.0004s2464 Capsella rubella HOM05D000194 ORTHO05D000069 4.6e-10 68.2 97 45.4
BcaC08g44869 Brassica carinata HOM05D000194 ORTHO05D000069 7.8e-10 67.4 90 50.0
PGR004G1491 Punica granatum HOM05D000194 ORTHO05D000069 1.3e-09 66.6 111 45.0
TPR.G4765 Trifolium pratense HOM05D000194 ORTHO05D000069 1.3e-09 66.6 109 43.1
A07p23690 Brassica napus HOM05D000194 ORTHO05D000069 1.7e-09 66.2 89 49.4
MD14G1064200 Malus domestica HOM05D000194 ORTHO05D000069 3.0e-09 65.5 107 43.0
Ca_12120_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 6.6e-09 64.3 89 46.1
MD12G1063900 Malus domestica HOM05D000194 ORTHO05D000069 6.6e-09 64.3 109 41.3
SGA_v2.0_scaffold273G46445 Striga asiatica HOM05D000001 ORTHO05D000003 6.6e-09 64.3 109 44.0
A05p02820 Brassica napus HOM05D000194 ORTHO05D000069 1.1e-08 63.5 92 46.7
Manes.08G047400 Manihot esculenta HOM05D000194 ORTHO05D000069 1.5e-08 63.2 116 42.2
Hma1.2p1_0856F.1_g229080 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 1.9e-08 62.8 106 43.4
TWI53G0530 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 1.9e-08 62.8 109 44.0
BraA07t30021Z Brassica rapa HOM05D000194 ORTHO05D000069 2.5e-08 62.4 92 46.7
CsaV3_3G039100 Cucumis sativus L. HOM05D000194 ORTHO05D000069 2.5e-08 62.4 107 43.9
Phvul.007G256800 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 2.5e-08 62.4 82 47.6
Psat3g070440 Pisum sativum HOM05D000194 ORTHO05D000069 2.5e-08 62.4 113 39.8
HanXRQChr01g0008621 Helianthus annuus HOM05D000194 ORTHO05D000069 3.3e-08 62.0 102 43.1
MSTRG.6461 Avicennia marina HOM05D000194 ORTHO05D000069 4.3e-08 61.6 105 44.8
TAR623G1219 Trochodendron aralioides HOM05D000194 ORTHO05D000069 4.3e-08 61.6 111 40.5
BolC6t35907H Brassica oleracea HOM05D037424 ORTHO05D106046 5.6e-08 61.2 36 83.3
MELO3C009653.2 Cucumis melo HOM05D000194 ORTHO05D000069 5.6e-08 61.2 107 43.0
Lsat_1_v5_gn_5_163941 Lactuca sativa HOM05D000194 ORTHO05D000069 5.6e-08 61.2 98 45.9
Medtr1g059270 Medicago truncatula HOM05D000194 ORTHO05D000069 5.6e-08 61.2 105 41.9
Medtr7g092510 Medicago truncatula HOM05D000194 ORTHO05D000069 5.6e-08 61.2 108 39.8
Lsat_1_v5_gn_9_28401 Lactuca sativa HOM05D000194 ORTHO05D000069 9.5e-08 60.5 98 44.9
Oeu018019.1 Olea europaea HOM05D000194 ORTHO05D000069 9.5e-08 60.5 109 43.1
Rhsim03G0010700 Rhododendron simsii HOM05D000194 ORTHO05D000069 9.5e-08 60.5 56 55.4
GSVIVG01033350001 Vitis vinifera HOM05D000194 ORTHO05D000069 9.5e-08 60.5 106 39.6
Aa31LG2G10680 Aethionema arabicum HOM05D000194 ORTHO05D000069 1.6e-07 59.7 69 47.8
Potri.006G057200 Populus trichocarpa HOM05D000194 ORTHO05D000069 1.6e-07 59.7 106 43.4
Sopen10g029710 Solanum pennellii HOM05D000194 ORTHO05D000069 1.6e-07 59.7 85 47.1
PGSC0003DMG400008183 Solanum tuberosum HOM05D000194 ORTHO05D000069 1.6e-07 59.7 85 47.1
BcaB02g07572 Brassica carinata HOM05D000194 ORTHO05D000069 2.1e-07 59.3 48 64.6
Manes.09G030600 Manihot esculenta HOM05D000194 ORTHO05D000069 2.8e-07 58.9 116 39.7
SalBow6G2031 Salvia bowleyana HOM05D000194 ORTHO05D000069 2.8e-07 58.9 106 44.3
Sed0022117 Sechium edule HOM05D000194 ORTHO05D000069 2.8e-07 58.9 65 53.8
Solyc10g079070.2 Solanum lycopersicum HOM05D000194 ORTHO05D000069 2.8e-07 58.9 85 47.1
arahy.Tifrunner.gnm1.ann1.35WB4A Arachis hypogaea HOM05D000194 ORTHO05D000069 3.6e-07 58.5 105 41.9
arahy.Tifrunner.gnm1.ann1.VUQ1KR Arachis hypogaea HOM05D000194 ORTHO05D000069 3.6e-07 58.5 105 41.9
CAN.G1161.5 Capsicum annuum HOM05D000194 ORTHO05D000069 3.6e-07 58.5 69 52.2
Os03g0728900 Oryza sativa ssp. japonica HOM05D000194 ORTHO05D000069 3.6e-07 58.5 92 41.3
Eucgr.A02413 Eucalyptus grandis HOM05D000194 ORTHO05D000069 6.2e-07 57.8 105 44.8
Nitab4.5_0000991g0110 Nicotiana tabacum HOM05D000194 ORTHO05D000069 6.2e-07 57.8 73 49.3
unitig_736.g22294 Utricularia gibba HOM05D000194 ORTHO05D000069 6.2e-07 57.8 107 40.2
BolC6t37636H Brassica oleracea HOM05D000194 ORTHO05D000069 8.0e-07 57.4 92 44.6
CSS0046332 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 8.0e-07 57.4 61 50.8
Cpa.g.sc160.32 Carica papaya HOM05D000194 ORTHO05D000069 8.0e-07 57.4 80 42.5
CDE07G0313 Ceratophyllum demersum HOM05D000194 ORTHO05D000069 8.0e-07 57.4 116 36.2
ClCG10G017310 Citrullus lanatus HOM05D000194 ORTHO05D000069 8.0e-07 57.4 107 42.1
Duzib093G0141 Durio zibethinus HOM05D000194 ORTHO05D000069 8.0e-07 57.4 58 55.2
HanXRQChr13g0391021 Helianthus annuus HOM05D000194 ORTHO05D000069 8.0e-07 57.4 103 40.8
EL10Ac3g06983 Beta vulgaris HOM05D000194 ORTHO05D000069 1.1e-06 57.0 56 55.4
Ciclev10005087m.g Citrus clementina HOM05D000194 ORTHO05D000069 1.1e-06 57.0 53 58.5
Lalb_Chr20g0110991 Lupinus albus HOM05D000194 ORTHO05D000069 1.1e-06 57.0 107 40.2
Nn7g36116 Nelumbo nucifera HOM05D000194 ORTHO05D000069 1.1e-06 57.0 73 50.7
VMungo0720G2682 Vigna mungo HOM05D000194 ORTHO05D000069 1.1e-06 57.0 82 45.1
Actinidia09371 Actinidia chinensis HOM05D000194 ORTHO05D000069 1.4e-06 56.6 99 38.4
Actinidia34004 Actinidia chinensis HOM05D000194 ORTHO05D000069 1.4e-06 56.6 86 43.0
BcaC02g12473 Brassica carinata HOM05D000194 ORTHO05D000069 1.4e-06 56.6 97 43.3
C04p03430 Brassica napus HOM05D000194 ORTHO05D000069 1.4e-06 56.6 97 43.3
HanXRQChr10g0291891 Helianthus annuus HOM05D000194 ORTHO05D000069 1.4e-06 56.6 64 50.0
Lj2A374G35 Lonicera japonica HOM05D000194 ORTHO05D000069 1.4e-06 56.6 67 52.2
Lalb_Chr22g0355841 Lupinus albus HOM05D000194 ORTHO05D000069 1.4e-06 56.6 82 43.9
Lalb_Chr25g0287551 Lupinus albus HOM05D000194 ORTHO05D000069 1.4e-06 56.6 107 39.3
Prupe.7G070200 Prunus persica HOM05D000194 ORTHO05D000069 1.4e-06 56.6 107 37.4
TAR369G0121 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.4e-06 56.6 71 50.7
vmacro08023 Vaccinium macrocarpon HOM05D000194 ORTHO05D000069 1.4e-06 56.6 53 54.7
A07p02420 Brassica napus HOM05D000194 ORTHO05D000069 1.8e-06 56.2 56 48.2
BraA07t28035Z Brassica rapa HOM05D000194 ORTHO05D000069 1.8e-06 56.2 56 48.2
CDE06G0936 Ceratophyllum demersum HOM05D000194 ORTHO05D000069 1.8e-06 56.2 87 43.7
Dinv39203 Davidia involucrata HOM05D000194 ORTHO05D000069 1.8e-06 56.2 82 41.5
Glyma.02G174800 Glycine max HOM05D000194 ORTHO05D000069 1.8e-06 56.2 50 58.0
Lalb_Chr01g0017591 Lupinus albus HOM05D000194 ORTHO05D000069 1.8e-06 56.2 107 39.3
Peaxi162Scf00003g04241 Petunia axillaris HOM05D000194 ORTHO05D000069 1.8e-06 56.2 96 42.7
Phvul.010G024800 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 1.8e-06 56.2 89 40.4
SalBow1G1429 Salvia bowleyana HOM05D000194 ORTHO05D000069 1.8e-06 56.2 109 37.6
VMungo0331G0335 Vigna mungo HOM05D000194 ORTHO05D000069 1.8e-06 56.2 89 40.4
A09p65200 Brassica napus HOM05D000194 ORTHO05D000069 2.3e-06 55.8 68 47.1
ECA248G1960 Erigeron canadensis HOM05D006723 ORTHO05D008194 2.3e-06 55.8 96 42.7
Migut.K00063 Erythranthe guttata HOM05D000194 ORTHO05D000069 2.3e-06 55.8 111 42.3
FAN05G5106 Fragaria x ananassa HOM05D000194 ORTHO05D000069 2.3e-06 55.8 103 37.9
RcHm_v2.0_Chr6g0310101 Rosa chinensis HOM05D000194 ORTHO05D000069 2.3e-06 55.8 91 38.5
BraA09t41863Z Brassica rapa HOM05D000194 ORTHO05D000069 3.1e-06 55.5 68 47.1
Cc06_g16420 Coffea canephora HOM05D000194 ORTHO05D000069 3.1e-06 55.5 113 37.2
Haze_22377 Corylus avellana HOM05D000194 ORTHO05D000069 3.1e-06 55.5 80 40.0
FAN02G1333 Fragaria x ananassa HOM05D000194 ORTHO05D000069 3.1e-06 55.5 101 37.6
MBI04_g42668_MAGBIO Magnolia biondii HOM05D000194 ORTHO05D000069 3.1e-06 55.5 89 40.4
Oeu035889.1 Olea europaea HOM05D000194 ORTHO05D000069 3.1e-06 55.5 69 43.5
Peaxi162Scf00285g00230 Petunia axillaris HOM05D000194 ORTHO05D000069 3.1e-06 55.5 53 54.7
Potri.002G248500 Populus trichocarpa HOM05D000194 ORTHO05D000069 3.1e-06 55.5 89 38.2
Sabra02G0189200 Salix brachista HOM05D000194 ORTHO05D000069 3.1e-06 55.5 89 38.2
Zm00001eb275820 Zea mays HOM05D000194 ORTHO05D000069 3.1e-06 55.5 63 49.2
Lj4A76T63 Lonicera japonica HOM05D000194 ORTHO05D000069 4.0e-06 55.1 69 47.8
Lj1g0022078 Lotus japonicus HOM05D000194 ORTHO05D000069 4.0e-06 55.1 115 36.5
Lj5g0000208 Lotus japonicus HOM05D000194 ORTHO05D000069 4.0e-06 55.1 99 38.4
Nn2g15493 Nelumbo nucifera HOM05D000194 ORTHO05D000069 4.0e-06 55.1 73 49.3
Nitab4.5_0000608g0010 Nicotiana tabacum HOM05D000194 ORTHO05D000069 4.0e-06 55.1 57 52.6
Sabra16G0054900 Salix brachista HOM05D000194 ORTHO05D000069 4.0e-06 55.1 48 60.4
Sed0006513 Sechium edule HOM05D000194 ORTHO05D000069 4.0e-06 55.1 56 51.8
Aqoxy5G03185 Aquilegia oxysepala HOM05D000194 ORTHO05D000069 5.2e-06 54.7 64 50.0
arahy.Tifrunner.gnm1.ann1.TWQ0V4 Arachis hypogaea HOM05D000194 ORTHO05D000069 5.2e-06 54.7 69 46.4
arahy.Tifrunner.gnm1.ann1.U34X7W Arachis hypogaea HOM05D000194 ORTHO05D000069 5.2e-06 54.7 65 47.7
arahy.Tifrunner.gnm1.ann1.W9Z2JH Arachis hypogaea HOM05D000194 ORTHO05D000069 5.2e-06 54.7 69 46.4
MSTRG.24392 Avicennia marina HOM05D000194 ORTHO05D000069 5.2e-06 54.7 55 52.7
CSS0021114 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 5.2e-06 54.7 82 41.5
Duzib041G0407 Durio zibethinus HOM05D000194 ORTHO05D000069 5.2e-06 54.7 79 43.0
MD05G1065100 Malus domestica HOM05D000194 ORTHO05D000069 5.2e-06 54.7 92 35.9
Psat6g072520 Pisum sativum HOM05D000194 ORTHO05D000069 5.2e-06 54.7 53 52.8
PGR142G0448 Punica granatum HOM05D000194 ORTHO05D000069 5.2e-06 54.7 52 55.8
Sabra06G0040300 Salix brachista HOM05D000194 ORTHO05D000069 5.2e-06 54.7 53 56.6
SHI26414 Sapria himalayana HOM05D000194 ORTHO05D000069 5.2e-06 54.7 79 41.8
SEGI_36454 Sequoiadendron giganteum HOM05D000194 ORTHO05D000069 5.2e-06 54.7 66 47.0
Sc13g0002040 Simmondsia chinensis HOM05D000194 ORTHO05D000069 5.2e-06 54.7 100 40.0
TWI56G1122 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 5.2e-06 54.7 103 36.9
unitig_899.g15083 Utricularia gibba HOM05D003863 ORTHO05D004372 5.2e-06 54.7 90 42.2
FvH4_6g22930 Fragaria vesca HOM05D000194 ORTHO05D000069 6.8e-06 54.3 101 36.6
FAN14G1392 Fragaria x ananassa HOM05D000194 ORTHO05D000069 6.8e-06 54.3 101 36.6
Oeu033762.1 Olea europaea HOM05D000194 ORTHO05D000069 6.8e-06 54.3 68 50.0
PSO384G3932 Papaver somniferum HOM05D000194 ORTHO05D000069 6.8e-06 54.3 111 41.4
Ah.04g152030 Amaranthus hybridus HOM05D006723 ORTHO05D008194 8.9e-06 53.9 51 56.9
Ah.13g076150 Amaranthus hybridus HOM05D000194 ORTHO05D000069 8.9e-06 53.9 55 52.7
AL1G20614 Arabidopsis lyrata HOM05D000194 ORTHO05D000069 8.9e-06 53.9 73 47.9
BcaC06g36399 Brassica carinata HOM05D000194 ORTHO05D000069 8.9e-06 53.9 56 46.4
C07p04550 Brassica napus HOM05D000194 ORTHO05D000069 8.9e-06 53.9 56 46.4
CSS0016708 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 8.9e-06 53.9 67 46.3
Medtr1g017350 Medicago truncatula HOM05D000194 ORTHO05D000069 8.9e-06 53.9 93 39.8
Hund24755 Selenicereus undatus HOM05D000194 ORTHO05D000069 8.9e-06 53.9 48 58.3
THA.LOC104819959 Tarenaya hassleriana HOM05D000194 ORTHO05D000069 8.9e-06 53.9 55 50.9
unitig_37.g12712 Utricularia gibba HOM05D000194 ORTHO05D000069 8.9e-06 53.9 67 49.3
vmacro18009 Vaccinium macrocarpon HOM05D000194 ORTHO05D000069 8.9e-06 53.9 84 42.9
GSVIVG01009292001 Vitis vinifera HOM05D000194 ORTHO05D000069 8.9e-06 53.9 105 37.1


User provided reference genes

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