Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p07400 Brassica napus HOM05D007180 ORTHO05D009028 5.2e-201 704.1 347 100.0
BolC6t35829H Brassica oleracea HOM05D007180 ORTHO05D009028 1.3e-180 636.3 347 92.5
A06p02010 Brassica napus HOM05D007180 ORTHO05D009028 1.7e-180 636.0 347 92.2
BraA06t23417Z Brassica rapa HOM05D007180 ORTHO05D009028 1.7e-180 636.0 347 92.2
Sp1g38710 Schrenkiella parvula HOM05D007180 ORTHO05D009028 2.7e-173 612.1 347 89.3
Thhalv10011664m.g Eutrema salsugineum HOM05D007180 ORTHO05D009028 6.6e-172 607.4 347 89.0
Carub.0001s4110 Capsella rubella HOM05D007180 ORTHO05D009028 8.7e-172 607.1 347 89.0
AT1G52155 Arabidopsis thaliana HOM05D007180 ORTHO05D009028 3.3e-171 605.1 347 88.5
AL1G60250 Arabidopsis lyrata HOM05D007180 ORTHO05D009028 1.6e-170 602.8 347 88.2
CARHR042290 Cardamine hirsuta HOM05D007180 ORTHO05D009028 1.1e-169 600.1 347 87.6
Aa31LG10G2730 Aethionema arabicum HOM05D007180 ORTHO05D009028 5.8e-160 567.8 347 83.0
THA.LOC104817969 Tarenaya hassleriana HOM05D007180 ORTHO05D009028 3.2e-158 562.0 351 82.3
THA.LOC104810533 Tarenaya hassleriana HOM05D007180 ORTHO05D009028 6.0e-157 557.8 349 82.5
BcaC08g43372 Brassica carinata HOM05D007180 ORTHO05D009028 2.5e-155 552.4 287 97.2
Atru.chr1.3471 Acer truncatum HOM05D007180 ORTHO05D009028 1.9e-142 509.6 337 75.7
Ciclev10026017m.g Citrus clementina HOM05D007180 ORTHO05D009028 9.4e-142 507.3 337 75.1
Prupe.3G062900 Prunus persica HOM05D007180 ORTHO05D009028 2.3e-140 502.7 337 74.5
FvH4_6g32020 Fragaria vesca HOM05D007180 ORTHO05D009028 8.8e-140 500.7 338 74.0
FAN14G2528 Fragaria x ananassa HOM05D007180 ORTHO05D009028 8.8e-140 500.7 338 74.0
MD09G1206800 Malus domestica HOM05D007180 ORTHO05D009028 9.7e-139 497.3 337 73.0
RcHm_v2.0_Chr2g0139631 Rosa chinensis HOM05D007180 ORTHO05D009028 1.3e-138 496.9 338 73.7
Duzib235G1436 Durio zibethinus HOM05D007180 ORTHO05D009028 2.2e-138 496.1 337 74.2
QL05p020883 Quercus lobata HOM05D007180 ORTHO05D009028 8.2e-138 494.2 337 73.3
CiPaw.02G147300 Carya illinoinensis HOM05D007180 ORTHO05D009028 1.8e-137 493.0 337 72.7
CANSAT56G0293 Cannabis sativa HOM05D007180 ORTHO05D009028 4.1e-137 491.9 338 73.7
FAN02G1418 Fragaria x ananassa HOM05D007180 ORTHO05D009028 4.1e-137 491.9 338 73.1
Gorai.003G063600 Gossypium raimondii HOM05D007180 ORTHO05D009028 2.6e-136 489.2 344 72.4
GSVIVG01017035001 Vitis vinifera HOM05D007180 ORTHO05D009028 2.6e-136 489.2 337 73.6
Gohir.A02G119000 Gossypium hirsutum HOM05D007180 ORTHO05D009028 7.7e-136 487.6 336 73.5
PGR102G1587 Punica granatum HOM05D007180 ORTHO05D009028 1.7e-135 486.5 337 71.8
MD17G1187500 Malus domestica HOM05D007180 ORTHO05D009028 8.5e-135 484.2 337 72.4
Gohir.D03G059800 Gossypium hirsutum HOM05D007180 ORTHO05D009028 1.1e-134 483.8 344 71.8
Thecc.06G096400 Theobroma cacao HOM05D007180 ORTHO05D009028 1.9e-134 483.0 338 72.8
Glyma.08G202600 Glycine max HOM05D007180 ORTHO05D009028 9.4e-134 480.7 344 71.5
Lj3g0006974 Lotus japonicus HOM05D007180 ORTHO05D009028 2.1e-133 479.6 339 72.3
TPR.G35011 Trifolium pratense HOM05D007180 ORTHO05D009028 6.1e-133 478.0 339 71.4
Hma1.2p1_1689F.1_g297640 Hydrangea macrophylla HOM05D007180 ORTHO05D009028 1.4e-132 476.9 337 71.5
Cfa002118 Carpinus fangiana HOM05D007180 ORTHO05D009028 3.9e-132 475.3 337 69.7
Glyma.07G017400 Glycine max HOM05D007180 ORTHO05D009028 5.1e-132 474.9 344 70.6
TAR383G0610 Trochodendron aralioides HOM05D007180 ORTHO05D009028 5.1e-132 474.9 347 70.6
Psat4g197600 Pisum sativum HOM05D007180 ORTHO05D009028 1.5e-131 473.4 339 70.8
Medtr8g013830 Medicago truncatula HOM05D007180 ORTHO05D009028 8.2e-130 467.6 338 70.1
Lalb_Chr04g0262871 Lupinus albus HOM05D007180 ORTHO05D009028 1.1e-129 467.2 338 69.8
Haze_16331 Corylus avellana HOM05D007180 ORTHO05D009028 1.8e-129 466.5 354 66.7
Eucgr.F03061 Eucalyptus grandis HOM05D007180 ORTHO05D009028 1.5e-128 463.4 337 68.8
Sed0016027 Sechium edule HOM05D007180 ORTHO05D009028 2.6e-128 462.6 338 69.2
Phvul.010G146700 Phaseolus vulgaris HOM05D007180 ORTHO05D009028 4.5e-128 461.8 344 67.7
Nn3g18173 Nelumbo nucifera HOM05D007180 ORTHO05D009028 7.7e-128 461.1 347 68.3
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.1e-126 457.2 339 69.9
MELO3C024267.2 Cucumis melo HOM05D007180 ORTHO05D009028 1.1e-126 457.2 297 76.4
CsaV3_7G033560 Cucumis sativus L. HOM05D007180 ORTHO05D009028 3.2e-126 455.7 342 68.1
PSO210G4764 Papaver somniferum HOM05D007180 ORTHO05D009028 5.5e-126 454.9 342 65.8
ClCG09G001780 Citrullus lanatus HOM05D007180 ORTHO05D009028 2.1e-125 453.0 354 66.9
Aqoxy7G03907 Aquilegia oxysepala HOM05D007180 ORTHO05D009028 4.7e-125 451.8 345 65.5
PSO210G1533 Papaver somniferum HOM05D007180 ORTHO05D009028 8.0e-125 451.1 342 64.9
Actinidia39147 Actinidia chinensis HOM05D007180 ORTHO05D009028 1.0e-124 450.7 346 65.9
Dinv30459 Davidia involucrata HOM05D007180 ORTHO05D009028 1.4e-124 450.3 279 80.3
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 3.0e-124 449.1 338 67.8
Actinidia09001 Actinidia chinensis HOM05D007180 ORTHO05D009028 6.7e-124 448.0 346 65.6
Potri.001G187300 Populus trichocarpa HOM05D007180 ORTHO05D009028 8.8e-124 447.6 319 71.8
arahy.Tifrunner.gnm1.ann1.BL3LB4 Arachis hypogaea HOM05D007180 ORTHO05D009028 2.0e-123 446.4 362 63.8
Rhsim12G0201900 Rhododendron simsii HOM05D007180 ORTHO05D009028 2.6e-123 446.0 367 63.2
Cc04_g02770 Coffea canephora HOM05D007180 ORTHO05D009028 9.7e-123 444.1 339 65.2
TWI75G1824 Tripterygium wilfordii HOM05D007180 ORTHO05D009028 9.7e-123 444.1 337 67.1
Oeu060509.1 Olea europaea HOM05D007180 ORTHO05D009028 2.2e-119 433.0 339 65.2
TAR626G1393 Trochodendron aralioides HOM05D007180 ORTHO05D009028 7.2e-118 427.9 347 63.7
Nitab4.5_0001315g0310 Nicotiana tabacum HOM05D007180 ORTHO05D009028 4.7e-117 425.2 345 62.3
Migut.I00923 Erythranthe guttata HOM05D007180 ORTHO05D009028 6.1e-117 424.9 291 68.4
Nitab4.5_0007758g0080 Nicotiana tabacum HOM05D007180 ORTHO05D009028 3.0e-116 422.5 346 62.4
PGSC0003DMG401002538 Solanum tuberosum HOM05D007180 ORTHO05D009028 3.0e-116 422.5 298 68.1
Solyc03g120830.3 Solanum lycopersicum HOM05D007180 ORTHO05D009028 4.0e-116 422.2 345 61.2
Sopen03g039650 Solanum pennellii HOM05D007180 ORTHO05D009028 5.2e-116 421.8 345 60.9
Sc10g0007260 Simmondsia chinensis HOM05D007180 ORTHO05D009028 8.8e-116 421.0 294 70.1
SalBow2G0157 Salvia bowleyana HOM05D007180 ORTHO05D009028 2.6e-115 419.5 338 60.4
Lsat_1_v5_gn_4_100560 Lactuca sativa HOM05D007180 ORTHO05D009028 9.7e-115 417.5 345 59.7
AUR62031877 Chenopodium quinoa HOM05D007180 ORTHO05D009028 2.8e-114 416.0 317 65.3
CAN.G438.9 Capsicum annuum HOM05D007180 ORTHO05D009028 8.3e-114 414.5 329 63.2
HanXRQChr09g0275941 Helianthus annuus HOM05D007180 ORTHO05D009028 5.9e-112 408.3 343 57.7
EL10Ac9g22108 Beta vulgaris HOM05D007180 ORTHO05D009028 3.8e-111 405.6 290 69.0
Lj5A56T50 Lonicera japonica HOM05D007180 ORTHO05D009028 3.8e-111 405.6 301 69.1
AUR62022171 Chenopodium quinoa HOM05D007180 ORTHO05D009028 1.9e-110 403.3 345 60.3
Peaxi162Scf00038g00837 Petunia axillaris HOM05D007180 ORTHO05D009028 1.2e-109 400.6 345 59.1
Manes.11G035900 Manihot esculenta HOM05D007180 ORTHO05D009028 1.1e-105 387.5 336 58.3
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 5.9e-104 381.7 255 72.9
Hma1.2p1_1689F.1_g297650 Hydrangea macrophylla HOM05D007180 ORTHO05D009028 1.8e-100 370.2 260 72.7
vmacro16982 Vaccinium macrocarpon HOM05D007180 ORTHO05D009028 8.9e-100 367.9 340 56.5
CSS0022642 Camellia sinensis var. sinensis HOM05D007180 ORTHO05D009028 1.2e-96 357.5 260 68.5
Zm00001eb156840 Zea mays HOM05D007180 ORTHO05D009028 2.7e-96 356.3 297 56.9
arahy.Tifrunner.gnm1.ann1.Z8Y5NA Arachis hypogaea HOM05D007180 ORTHO05D009028 3.9e-95 352.4 342 56.7
Os11g0466300 Oryza sativa ssp. japonica HOM05D007180 ORTHO05D009028 1.9e-94 350.1 289 57.4
SGA_v2.0_scaffold5G02533 Striga asiatica HOM05D007180 ORTHO05D009028 1.1e-89 334.3 346 52.3
Hund06649 Selenicereus undatus HOM05D007180 ORTHO05D009028 1.4e-89 334.0 289 60.6
AagrBONN_evm.TU.Sc2ySwM_344.297 Anthoceros agrestis HOM05D007180 ORTHO05D009028 1.6e-85 320.5 288 52.4
Mapoly0061s0142 Marchantia polymorpha HOM05D007180 ORTHO05D009028 5.2e-84 315.5 288 51.7
SEGI_07196 Sequoiadendron giganteum HOM05D007180 ORTHO05D009028 6.4e-82 308.5 293 50.2
SEGI_18381 Sequoiadendron giganteum HOM05D007180 ORTHO05D009028 6.4e-82 308.5 293 50.2
ATR0705G160 Amborella trichopoda HOM05D007180 ORTHO05D009028 1.2e-80 304.3 235 62.1
Pp3c3_33050 Physcomitrium patens HOM05D007180 ORTHO05D009028 6.0e-80 302.0 288 50.3
Pp3c4_2280 Physcomitrium patens HOM05D007180 ORTHO05D009028 8.6e-79 298.1 288 49.3
ECA232G5021 Erigeron canadensis HOM05D000415 ORTHO05D001916 1.5e-78 297.4 246 60.6
Pp3c27_6190 Physcomitrium patens HOM05D007180 ORTHO05D009028 3.6e-77 292.7 286 50.3
Pp3c10_19810 Physcomitrium patens HOM05D007180 ORTHO05D009028 3.1e-76 289.7 288 49.3
Pp3c12_14730 Physcomitrium patens HOM05D007180 ORTHO05D009028 6.4e-74 282.0 287 49.1
Pp3c5_1000 Physcomitrium patens HOM05D007180 ORTHO05D009028 8.3e-74 281.6 288 47.9
unitig_748.g7435 Utricularia gibba HOM05D007180 ORTHO05D009028 3.3e-70 269.6 304 46.1
DCAR_016200 Daucus carota HOM05D007180 ORTHO05D009028 2.0e-67 260.4 338 42.9
Cpa.g.sc109.35 Carica papaya HOM05D007180 ORTHO05D009028 1.7e-66 257.3 338 45.6
SMO364G0215 Selaginella moellendorffii HOM05D007180 ORTHO05D009028 1.5e-59 234.2 213 52.6
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.8e-42 176.4 103 76.7
FAN09G3228 Fragaria x ananassa HOM05D007180 ORTHO05D009028 1.2e-27 128.3 140 49.3
MBI04_g27060_MAGBIO Magnolia biondii HOM05D007180 ORTHO05D009028 2.5e-25 120.6 130 47.7


User provided reference genes

Program Settings