Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 2656.3 1352 100.0
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 2639.0 1352 99.5
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 2618.2 1352 98.9
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 2523.8 1358 95.7
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 2520.7 1358 95.7
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 2355.5 1371 90.1
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 2120.9 1408 80.0
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 2035.8 1408 76.6
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 2001.1 1419 76.6
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1974.1 1420 76.1
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1964.5 1425 74.9
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1956.4 1415 74.9
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1908.3 1415 73.1
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1757.3 1383 68.3
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1738.0 1262 75.3
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1451.4 1433 57.0
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1446.0 1461 56.1
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1437.9 1436 56.7
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1435.6 1471 55.6
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1432.9 1457 56.3
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1432.5 1464 56.2
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1424.8 1490 55.4
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1424.1 1460 55.7
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1417.5 1470 55.4
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1415.6 1470 55.4
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1409.0 1473 53.8
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1406.3 1456 54.9
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1404.0 1478 55.1
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1402.1 1467 54.5
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1397.5 1472 54.8
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1373.6 1458 54.0
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1370.1 1463 54.0
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1362.8 1455 53.2
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1362.4 1464 53.8
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1358.6 1485 53.2
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1358.2 1488 52.7
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1355.9 1460 53.3
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1355.1 1463 53.5
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1355.1 1462 52.6
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1351.7 1453 53.2
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1349.7 1478 53.0
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1349.3 1478 52.8
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1348.2 1456 53.0
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1347.0 1470 53.5
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1345.1 1436 53.0
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1343.6 1405 54.8
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1337.4 1455 53.2
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1335.5 1450 53.9
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1333.9 1450 53.7
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1332.8 1484 52.4
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1332.0 1485 52.2
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1330.1 1526 50.8
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1322.0 1459 52.4
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1308.9 1452 52.2
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1307.0 1483 51.4
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1304.7 1510 51.7
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1298.5 1436 53.1
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1295.0 1466 51.6
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1290.0 1431 52.1
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1285.4 1423 52.4
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1280.8 1460 51.6
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1277.3 1430 51.3
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1273.8 1456 51.2
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1265.0 1302 55.4
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1264.2 1358 53.3
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1263.4 1435 51.5
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1262.3 1459 51.1
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1255.7 1391 53.5
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1255.0 1482 50.5
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1246.9 1456 51.3
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1243.8 1489 50.2
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1242.3 1460 51.0
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1240.7 1458 51.6
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1237.2 1492 50.7
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1234.2 1349 53.9
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1219.9 1214 57.7
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1213.7 1471 50.6
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1207.6 1460 49.6
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1191.4 1481 49.4
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1174.8 1420 48.6
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1167.1 1361 49.3
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1164.4 1422 48.2
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1159.4 1373 49.7
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1146.3 1274 52.9
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1130.5 1267 51.8
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1109.7 1380 47.6
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 8.6e-308 1060.8 1305 48.9
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.7e-292 1010.0 1064 54.6
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 8.0e-290 1001.1 1094 53.3
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 6.0e-285 984.9 1111 52.4
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.4e-281 973.8 1351 45.5
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 1.7e-279 966.8 1119 51.2
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 3.5e-277 959.1 1133 50.2
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 1.1e-275 954.1 897 58.2
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 7.8e-269 931.4 1270 45.7
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 3.8e-231 806.2 1490 38.7
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 4.2e-230 802.7 1485 37.9
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 1.4e-228 797.7 1036 47.0
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 6.7e-228 795.4 1440 38.6
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 3.2e-214 750.0 1504 35.0
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 2.7e-192 677.2 765 51.6
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 2.9e-191 673.7 937 47.1
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.0e-188 665.2 996 43.0
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 1.7e-178 631.3 516 62.4
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 9.8e-171 605.5 314 99.4
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 1.6e-157 561.6 1287 35.4
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 3.5e-152 543.9 274 100.0
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 4.3e-150 537.0 1825 28.7
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.0e-135 489.2 844 41.0
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 4.2e-129 467.2 584 50.0
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 4.6e-128 463.8 427 58.8
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 3.2e-113 414.5 611 44.5
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 2.3e-111 408.3 578 46.2
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.1e-110 406.0 439 53.5
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 7.4e-110 403.3 434 53.9
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.6e-94 351.7 1274 29.3
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 2.0e-78 298.9 236 67.8
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 1.7e-66 259.2 394 44.4
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 5.2e-63 247.7 532 37.6
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 8.1e-48 197.2 262 44.7
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 4.2e-36 158.3 157 54.8
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 5.3e-23 114.8 95 60.0
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 6.4e-21 107.8 87 57.5
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 3.0e-18 99.0 97 53.6
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 4.3e-17 95.1 93 55.9
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 5.6e-17 94.7 80 58.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.2e-14 87.0 69 55.1
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 4.5e-14 85.1 59 62.7
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 1.0e-13 84.0 86 57.0
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.3e-13 83.6 92 45.7
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 5.1e-10 71.6 103 39.8
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 1.9e-09 69.7 54 57.4
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 9.6e-09 67.4 43 65.1
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 1.6e-08 66.6 96 41.7
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 4.5e-06 58.5 70 45.7


User provided reference genes

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