Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 8.4e-157 557.0 282 100.0
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 5.6e-153 544.3 274 100.0
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 1.9e-148 529.3 274 97.8
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 1.3e-146 523.1 274 96.7
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 1.3e-144 516.5 278 94.2
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 1.3e-144 516.5 278 94.2
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 1.4e-135 486.5 272 91.9
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 2.3e-122 442.6 279 81.4
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 8.7e-122 440.7 273 82.8
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 6.5e-117 424.5 288 78.1
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 2.1e-115 419.5 288 76.7
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 1.4e-114 416.8 285 77.2
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 5.1e-114 414.8 283 79.2
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 1.5e-113 413.3 290 77.6
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 2.6e-110 402.5 281 76.9
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 1.6e-94 350.1 247 72.9
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 9.4e-84 314.3 281 59.4
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 4.7e-83 312.0 267 63.7
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 8.0e-83 311.2 267 63.3
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 3.0e-82 309.3 276 61.6
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 7.5e-81 304.7 275 60.0
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 1.3e-80 303.9 282 61.3
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 1.3e-80 303.9 282 61.3
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 1.8e-79 300.1 272 57.7
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 4.1e-79 298.9 236 67.8
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 1.2e-78 297.4 275 60.0
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 7.7e-78 294.7 282 56.4
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 6.6e-77 291.6 274 59.1
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 1.1e-76 290.8 274 59.1
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 1.1e-76 290.8 270 58.1
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 7.2e-76 288.1 267 59.6
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 7.2e-76 288.1 268 57.8
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 2.8e-75 286.2 262 60.3
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 6.1e-75 285.0 267 59.9
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 8.0e-75 284.6 237 62.0
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 8.0e-75 284.6 267 58.8
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 8.0e-75 284.6 266 58.6
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 1.0e-74 284.3 286 56.3
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 1.4e-74 283.9 269 57.6
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 2.3e-74 283.1 267 58.4
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 6.8e-74 281.6 267 57.3
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 8.9e-74 281.2 266 58.3
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 1.2e-73 280.8 261 57.9
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 2.0e-73 280.0 236 62.3
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 7.5e-73 278.1 273 57.1
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 9.8e-73 277.7 278 56.1
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 9.8e-73 277.7 215 67.0
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 1.3e-72 277.3 216 66.2
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 6.4e-72 275.0 255 59.6
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 6.4e-72 275.0 265 56.2
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 8.3e-72 274.6 270 56.7
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 8.3e-72 274.6 221 65.2
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 1.1e-71 274.2 225 61.8
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 1.4e-71 273.9 264 55.7
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 1.4e-71 273.9 278 55.4
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 1.4e-71 273.9 217 64.5
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 5.4e-71 271.9 239 59.4
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 9.2e-71 271.2 278 55.4
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 1.6e-70 270.4 287 54.4
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 3.5e-70 269.2 274 56.2
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 4.6e-70 268.9 291 54.6
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 1.7e-69 266.9 277 55.2
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 8.6e-69 264.6 269 56.1
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 1.1e-68 264.2 270 56.7
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 1.9e-68 263.5 266 56.0
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.1e-67 260.0 240 58.8
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 4.7e-67 258.8 236 59.3
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 8.0e-67 258.1 278 53.6
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 1.0e-66 257.7 265 54.3
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 8.9e-66 254.6 271 54.2
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 8.9e-66 254.6 249 57.8
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 2.6e-65 253.1 259 55.6
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 1.9e-63 246.9 263 54.4
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 9.2e-63 244.6 275 51.6
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 6.0e-62 241.9 291 51.9
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 3.0e-61 239.6 350 44.3
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 5.6e-60 235.3 269 52.4
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 8.1e-59 231.5 268 49.6
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 4.4e-57 225.7 229 54.6
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 5.8e-57 225.3 272 51.5
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 9.8e-57 224.6 269 51.7
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 1.7e-56 223.8 279 48.0
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 2.2e-56 223.4 261 50.2
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 1.1e-55 221.1 264 50.0
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 8.6e-53 211.5 297 47.1
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.1e-52 211.1 212 55.2
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 9.5e-52 208.0 165 67.3
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 9.9e-49 198.0 274 46.0
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 2.9e-48 196.4 283 43.8
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 2.4e-42 176.8 159 60.4
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 4.0e-42 176.0 167 57.5
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.8e-40 169.5 118 70.3
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 6.4e-40 168.7 155 57.4
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.7e-38 163.3 103 77.7
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 3.5e-38 162.9 245 42.4
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 3.5e-38 162.9 245 42.4
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 8.7e-37 158.3 157 54.8
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 5.6e-36 155.6 121 65.3
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 9.9e-33 144.8 236 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 9.3e-31 138.3 213 39.0
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 2.3e-29 133.7 225 41.8
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 1.1e-23 114.8 95 60.0
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.3e-21 107.8 87 57.5
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 6.2e-19 99.0 97 53.6
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 9.0e-18 95.1 93 55.9
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 1.9e-15 87.4 97 50.5
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.5e-15 87.0 69 55.1
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.7e-14 83.6 92 45.7
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 8.7e-13 78.6 55 69.1
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 8.7e-13 78.6 126 42.1
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 2.0e-09 67.4 43 65.1
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 1.4e-07 61.2 68 55.9
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 9.3e-07 58.5 70 45.7


User provided reference genes

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