Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 6.9e-215 750.4 377 100.0
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 5.0e-205 717.6 364 99.5
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.1e-204 716.5 361 100.0
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.1e-204 716.5 361 100.0
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 9.3e-204 713.4 361 99.7
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.2e-203 713.0 361 99.7
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 4.3e-201 704.5 361 97.8
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.1e-196 689.9 361 96.1
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.4e-196 689.5 362 95.6
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 3.6e-195 684.9 361 95.0
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 6.1e-195 684.1 360 95.3
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 7.9e-195 683.7 361 95.3
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 7.9e-195 683.7 360 95.3
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 7.9e-195 683.7 360 95.3
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 5.1e-194 681.0 360 95.0
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.1e-193 679.9 355 95.8
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 9.7e-193 676.8 361 92.0
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 1.5e-185 652.9 344 95.3
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 6.3e-184 647.5 359 88.9
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 2.4e-183 645.6 359 88.3
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 7.0e-183 644.0 363 86.8
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 5.9e-182 641.0 357 88.0
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.3e-181 639.8 357 87.7
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.3e-181 639.8 357 87.7
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 1.1e-180 636.7 355 88.5
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.1e-180 636.7 364 85.4
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.2e-179 633.3 359 88.6
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 8.0e-179 630.6 359 87.5
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.4e-178 629.8 359 88.3
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 2.3e-178 629.0 359 88.6
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 3.0e-178 628.6 355 87.6
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 8.8e-178 627.1 361 86.4
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-177 626.3 363 86.5
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-177 626.3 363 86.5
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.5e-177 626.3 361 87.3
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 2.0e-177 625.9 359 87.5
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.0e-177 625.9 359 87.5
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 2.6e-177 625.5 364 84.9
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 4.4e-177 624.8 356 86.2
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 5.7e-177 624.4 361 85.0
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.3e-176 623.2 359 86.9
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 1.7e-176 622.9 360 86.1
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.7e-176 622.9 355 86.5
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 2.2e-176 622.5 359 86.1
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 6.3e-176 620.9 357 85.2
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 4.1e-175 618.2 359 83.0
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 1.2e-174 616.7 355 85.9
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 1.6e-174 616.3 360 84.4
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 2.6e-174 615.5 360 84.2
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.5e-174 615.1 356 84.3
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 3.5e-174 615.1 359 85.5
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 5.9e-174 614.4 356 86.2
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 5.9e-174 614.4 355 85.9
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.0e-173 613.6 356 84.6
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.0e-173 613.6 359 85.5
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.7e-173 612.8 360 84.2
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.9e-173 612.1 356 84.3
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.9e-172 609.4 357 84.3
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.9e-172 609.4 357 84.0
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 2.5e-172 609.0 356 82.9
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 9.4e-172 607.1 354 84.5
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.2e-171 606.7 357 83.8
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 2.7e-171 605.5 361 83.9
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 4.7e-171 604.7 355 83.4
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 6.1e-171 604.4 365 81.9
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 8.0e-171 604.0 357 83.5
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 1.8e-170 602.8 357 83.2
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 5.2e-170 601.3 355 82.0
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 1.5e-169 599.7 361 82.3
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 1.5e-169 599.7 355 84.5
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 4.4e-169 598.2 356 82.0
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 5.7e-169 597.8 395 75.9
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.4e-167 593.2 350 83.7
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.0e-166 589.3 344 84.0
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 4.5e-166 588.2 344 84.9
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.7e-165 586.3 356 81.5
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 2.2e-165 585.9 357 81.8
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 6.5e-165 584.3 344 84.6
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 8.5e-165 583.9 375 78.9
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 7.2e-164 580.9 351 82.1
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 1.6e-163 579.7 355 80.3
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 1.6e-163 579.7 357 80.7
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.6e-163 579.7 357 80.7
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.0e-162 577.0 360 79.4
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 7.5e-161 570.9 350 81.4
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 2.2e-160 569.3 338 83.4
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 2.2e-160 569.3 350 80.9
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 6.3e-160 567.8 337 82.8
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 9.2e-159 563.9 351 78.9
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.2e-158 563.5 370 77.6
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 3.5e-158 562.0 454 64.5
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 1.1e-156 557.0 324 85.5
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 3.3e-156 555.4 359 77.7
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 5.6e-156 554.7 354 76.6
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 7.2e-156 554.3 339 82.0
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 5.9e-150 534.6 360 76.9
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 4.3e-148 528.5 312 84.3
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.6e-147 526.6 360 74.7
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 2.1e-147 526.2 297 87.5
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.8e-147 525.8 359 72.7
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 4.7e-147 525.0 432 64.8
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 1.2e-145 520.4 328 80.2
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 9.8e-145 517.3 299 84.9
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 1.2e-142 510.4 312 79.5
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 7.8e-142 507.7 339 72.9
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 2.3e-141 506.1 339 72.6
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.5e-140 503.4 338 72.5
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 5.6e-140 501.5 353 70.8
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 5.8e-137 491.5 268 92.5
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.3e-133 479.6 276 85.1
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 5.1e-133 478.4 339 68.4
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.5e-132 476.9 362 68.0
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.3e-130 469.5 360 68.9
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 1.2e-129 467.2 268 86.6
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 2.0e-121 439.9 262 84.0
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 2.2e-120 436.4 256 82.8
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 4.6e-118 428.7 260 81.2
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 6.2e-115 418.3 251 80.9
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 2.6e-97 359.8 208 85.6
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 6.3e-91 338.6 186 92.5
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 2.4e-90 336.7 178 89.9
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 7.2e-87 325.1 179 87.7
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.0e-80 304.7 359 53.8
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 3.7e-75 286.2 347 45.0
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 4.5e-73 279.3 335 44.8
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.2e-63 246.1 132 88.6
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.8e-61 240.7 143 84.6
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.2e-56 223.8 334 36.2
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 2.9e-56 223.4 124 87.1
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 2.4e-50 203.8 374 37.4
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 4.5e-41 172.9 103 81.6
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 7.3e-39 165.6 130 70.8
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.8e-38 163.7 109 77.1
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 5.7e-36 156.0 87 86.2
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 2.7e-33 147.1 80 93.8
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 2.7e-33 147.1 80 93.8
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 2.7e-33 147.1 80 93.8
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 4.3e-31 139.8 80 88.8
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 4.3e-31 139.8 80 88.8
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 1.6e-30 137.9 80 87.5
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 1.4e-29 134.8 84 78.6
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.5e-28 131.3 101 62.4
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 6.4e-27 125.9 78 74.4
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 2.4e-26 124.0 77 83.1
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 2.7e-25 120.6 107 61.7
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.7e-24 117.9 64 87.5
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 6.2e-22 109.4 88 69.3
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 8.9e-21 105.5 125 44.0
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 5.8e-20 102.8 64 82.8
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 7.3e-15 85.9 74 63.5
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 7.3e-15 85.9 54 85.2
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 6.8e-13 79.3 43 90.7
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 6.0e-09 66.2 36 86.1
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 7.8e-09 65.9 40 75.0
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 7.3e-07 59.3 37 70.3
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 1.2e-06 58.5 59 52.5
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 1.6e-06 58.2 33 81.8


User provided reference genes

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