Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 6.5e-206 720.7 422 100.0
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 6.4e-193 677.6 422 96.0
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 4.9e-185 651.4 412 95.4
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 8.9e-179 630.6 422 82.5
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 4.9e-177 624.8 422 87.2
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 3.9e-166 588.6 427 82.0
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.3e-129 467.2 488 64.1
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 6.7e-126 454.9 480 64.6
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.3e-121 440.7 476 62.6
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 2.2e-121 439.9 495 61.2
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 2.9e-121 439.5 463 66.5
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 7.0e-107 391.7 454 61.5
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 2.0e-106 390.2 467 60.2
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 4.5e-106 389.0 450 58.9
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 7.7e-106 388.3 460 61.3
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 7.7e-106 388.3 453 58.3
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.0e-105 387.9 454 62.3
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 1.7e-105 387.1 451 58.5
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.5e-104 384.0 452 63.9
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 3.4e-69 266.5 425 43.8
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.3e-57 228.0 509 40.1
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.1e-56 224.9 506 39.9
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.6e-55 221.1 493 40.6
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 2.8e-55 220.3 504 39.9
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 3.4e-53 213.4 477 35.4
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 7.6e-53 212.2 494 35.4
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 7.6e-53 212.2 494 36.2
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 9.9e-53 211.8 494 35.4
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 4.9e-52 209.5 498 39.4
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 7.1e-51 205.7 497 36.0
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 7.1e-51 205.7 483 34.2
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 1.3e-49 201.4 495 35.4
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.3e-49 201.4 494 39.9
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.5e-48 197.2 485 33.8
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 3.3e-48 196.8 495 37.8
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 3.3e-48 196.8 488 38.5
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 5.6e-48 196.1 493 36.5
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.2e-47 194.9 506 33.2
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.6e-47 194.5 461 34.7
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 1.6e-47 194.5 493 35.5
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 2.8e-47 193.7 499 33.7
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.2e-47 192.6 492 37.2
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 1.4e-46 191.4 331 40.8
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.4e-46 191.4 489 33.3
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.8e-46 191.0 488 35.0
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 2.4e-46 190.7 483 38.5
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 5.3e-46 189.5 473 33.4
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 9.0e-46 188.7 486 36.4
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 1.2e-45 188.3 522 37.4
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 2.0e-45 187.6 510 32.5
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 2.0e-45 187.6 505 32.5
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 2.6e-45 187.2 405 38.8
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 7.6e-45 185.7 491 37.7
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 7.6e-45 185.7 484 37.4
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.7e-44 184.5 405 39.5
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.2e-44 184.1 483 35.6
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 2.9e-44 183.7 487 36.1
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 2.9e-44 183.7 475 32.8
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 6.4e-44 182.6 465 33.1
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 6.4e-44 182.6 473 33.6
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 8.4e-44 182.2 495 34.1
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.4e-43 181.4 394 34.5
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 3.2e-43 180.3 441 36.5
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 4.2e-43 179.9 497 35.4
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 4.2e-43 179.9 405 37.5
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 5.4e-43 179.5 467 37.7
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 9.3e-43 178.7 429 40.8
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 9.3e-43 178.7 425 34.1
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 4.6e-42 176.4 470 32.6
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 6.0e-42 176.0 457 38.3
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 7.8e-42 175.6 495 33.9
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.6e-41 172.6 522 33.7
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 6.6e-41 172.6 477 31.2
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 8.7e-41 172.2 363 35.8
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 5.6e-40 169.5 470 39.1
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 1.3e-39 168.3 471 31.2
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.6e-39 167.9 482 33.6
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 6.2e-39 166.0 385 40.8
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 8.1e-39 165.6 540 30.0
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 8.1e-39 165.6 478 31.8
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 5.3e-38 162.9 489 33.5
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 9.0e-38 162.2 426 35.9
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.2e-37 161.8 357 42.0
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.2e-37 161.8 519 34.7
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.5e-37 161.4 488 35.7
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 2.6e-37 160.6 479 35.1
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.5e-37 159.8 468 36.3
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 9.9e-37 158.7 438 32.4
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 9.9e-37 158.7 462 34.0
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.7e-36 157.9 444 33.8
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.7e-36 157.9 444 33.8
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.7e-36 157.9 488 33.6
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 2.9e-36 157.1 453 36.2
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 3.8e-36 156.8 350 40.3
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 8.4e-36 155.6 482 28.8
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 5.4e-35 152.9 260 39.6
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.7e-34 150.6 359 36.2
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.6e-34 149.8 418 33.7
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 4.6e-34 149.8 446 36.3
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 6.0e-34 149.4 480 30.4
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.0e-33 148.7 360 34.7
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.8e-33 147.9 459 35.9
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 2.3e-33 147.5 392 33.9
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.6e-31 141.4 438 35.2
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.1e-31 141.0 382 30.9
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 2.1e-31 141.0 377 31.0
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 8.1e-31 139.0 417 32.1
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 2.4e-30 137.5 415 34.0
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 4.0e-30 136.7 433 38.3
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 5.3e-30 136.3 505 32.5
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.2e-29 135.2 428 29.7
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.2e-29 135.2 470 34.0
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 5.8e-29 132.9 423 28.8
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 9.9e-29 132.1 406 30.3
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.2e-28 131.0 300 33.3
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 7.1e-27 125.9 251 35.1
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.8e-25 121.3 185 44.3
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 2.5e-24 117.5 454 28.2
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.1e-23 114.4 261 36.0
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.8e-22 111.3 314 38.2
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 7.6e-21 105.9 333 28.5
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 6.5e-20 102.8 301 38.5
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.9e-19 101.3 247 38.1
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 2.5e-19 100.9 154 43.5
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.2e-19 100.5 258 34.5
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 1.2e-18 98.6 397 28.2
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.8e-17 94.7 190 37.4
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 1.8e-17 94.7 335 27.8
AL7G40510 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 3.7e-15 87.0 50 84.0
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 5.9e-13 79.7 62 61.3
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 7.7e-13 79.3 61 60.7
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.9e-12 77.4 61 59.0
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.2e-11 73.6 138 39.1
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 7.2e-11 72.8 187 36.4
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 9.4e-11 72.4 161 46.0
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 1.2e-10 72.0 247 27.9
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 2.5e-08 64.3 183 28.4
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 5.7e-08 63.2 102 43.1
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 2.8e-07 60.8 57 49.1
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 4.1e-06 57.0 105 37.1


User provided reference genes

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